View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_11 (Length: 452)
Name: NF9779_low_11
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_11 |
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| [»] chr6 (7 HSPs) |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 16917248 - 16916800
Alignment:
| Q |
1 |
caaaacttgaagagaactcgaagacatgttaggaatggactcaagattacgacaacatgaaatgtagagtttctgtagggaaccgagagagctaagttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| || |||||| |
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| T |
16917248 |
caaaacttgaagagaactcgaagacatgttaggaatggactcaagattaccacaacatgaaatgtagagtttctgtagggaactgagagatctgagttca |
16917149 |
T |
|
| Q |
101 |
ataggtagtaccttaatttgatcaaagttttcaatcataagttctgtgaggttaggcatcttaactgcaatatttctcaggaggaaagatgcaccatgag |
200 |
Q |
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||||||||||| | ||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||| |
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| T |
16917148 |
ttaggtagtaccgtgatttgatgaaagccttcaatcataagttctgtgaggttaggcatcttacctgcaatatctctcagga---aagatgcaccatgat |
16917052 |
T |
|
| Q |
201 |
cattaaactctttagtttttcctccaacataaacttcctcaacagagggaaggcttggaagttcaaatatagggatactctgaatgcttaacttagaaag |
300 |
Q |
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|||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16917051 |
cattaaactcttcagtttctcctccaacataaacttccttaacagagggaaggcttggaagttcaaatatagggatactctgaatgcttaacttagaaag |
16916952 |
T |
|
| Q |
301 |
ttgtgatagcatctctactccttcgattctcagcaccctctttaaattaggtaaatcatatagtgtcatttctcttaatgacggaaaagccttgtctttt |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| || || || |
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| T |
16916951 |
ttgtgagagcatctctactccttcgattctcagcacactctttaaattaggtaaatcatatagtgtcatttccgttaatgacggaaaagcgttttcggtt |
16916852 |
T |
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| Q |
401 |
gctttttcataaggtgaatcatcaatgtacatcacatttgtcatttgagata |
452 |
Q |
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| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16916851 |
gaaatttcataaggtgaatcatcaatgtacttcacatttgtcatttgagata |
16916800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 76 - 452
Target Start/End: Complemental strand, 16911978 - 16911605
Alignment:
| Q |
76 |
tagggaaccgagagagctaagttcaataggtagtaccttaatttgatcaaagttttcaatcataagttctgtgaggttaggcatcttaactgcaatattt |
175 |
Q |
| |
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|||||||| ||||||||| |||||| ||||||||||| | | ||||| |||| ||||||||||||||| ||||||||||||||||| ||||||||| | |
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| T |
16911978 |
tagggaacggagagagctgagttcattaggtagtaccgtgagttgatgaaaggcgtcaatcataagttctttgaggttaggcatcttacctgcaatatct |
16911879 |
T |
|
| Q |
176 |
ctcaggaggaaagatgcaccatgagcattaaactctttagtttttcctccaacataaacttcctcaacagagggaaggcttggaagttcaaatataggga |
275 |
Q |
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||||||| ||||||| ||||| || || ||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
16911878 |
ctcagga---aagatgcttcatgatcaatatcctcttcagtttctcctccaacataaacttccttaacagagggaaggcttggaagttcaaattgaggga |
16911782 |
T |
|
| Q |
276 |
tactctgaatgcttaacttagaaagttgtgatagcatctctactccttcgattctcagcaccctctttaaattaggtaaatcatatagtgtcatttctct |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||| | |
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| T |
16911781 |
tactctgaatgcttaacttagaaagttgtgatagcatctctactccttcgattctcaacaccctctctaaattaggtaaatcaaatagtgtcatttccgt |
16911682 |
T |
|
| Q |
376 |
taatgacggaaaagccttgtcttttgctttttcataaggtgaatcatcaatgtacatcacatttgtcatttgagata |
452 |
Q |
| |
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||||||||||||||| || || ||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16911681 |
taatgacggaaaagcattttcggttgaaatttcataaggtgaatcatcaatgtacttcacatttgtcatttgagata |
16911605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 16975207 - 16975084
Alignment:
| Q |
31 |
aggaatggactcaagattacgacaacatgaaatgtagagtttctgtagggaaccgagagagctaagttcaataggtagtaccttaatttgatcaaagttt |
130 |
Q |
| |
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|||||| |||||||| |||| | ||||||| ||||| ||||| | ||||| | |||||| | |||||| |||||||||||| || || |||||||||| |
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| T |
16975207 |
aggaatagactcaagcttaccaaaacatgagatgtatagtttttccagggatctaagagagttgagttcattaggtagtacctcaagttcatcaaagttt |
16975108 |
T |
|
| Q |
131 |
tcaatcataagttctgtgaggtta |
154 |
Q |
| |
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||||||||||||||| |||||||| |
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| T |
16975107 |
tcaatcataagttctttgaggtta |
16975084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 348
Target Start/End: Original strand, 16985936 - 16985987
Alignment:
| Q |
297 |
aaagttgtgatagcatctctactccttcgattctcagcaccctctttaaatt |
348 |
Q |
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||||||||| |||||||||||||||||||| | | | ||||||||||||||| |
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| T |
16985936 |
aaagttgtgttagcatctctactccttcgacttttaacaccctctttaaatt |
16985987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 16836923 - 16837029
Alignment:
| Q |
38 |
gactcaagattacgacaacatgaaatgtagagtttctgtagggaaccgagagagctaagttcaataggtagtaccttaatttgatcaaagttttcaatca |
137 |
Q |
| |
|
|||||||| || ||||| ||||||| | ||||| |||||||||| ||||||| | |||||| ||||||||||||| | || |||||| |||| ||| | |
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| T |
16836923 |
gactcaagctttggacaaaatgaaattaatagtttttgtagggaactgagagagttgagttcattaggtagtaccttgagttcatcaaacttttgaatga |
16837022 |
T |
|
| Q |
138 |
taagttc |
144 |
Q |
| |
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|||||| |
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| T |
16837023 |
aaagttc |
16837029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 16842070 - 16842140
Alignment:
| Q |
74 |
tgtagggaaccgagagagctaagttcaataggtagtaccttaatttgatcaaagttttcaatcataagttc |
144 |
Q |
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|||||||||| ||||||| | |||||| ||||||||||||| | || |||||| |||||||| | |||||| |
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| T |
16842070 |
tgtagggaactgagagagttgagttcattaggtagtaccttgagttcatcaaaattttcaatgaaaagttc |
16842140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 16869664 - 16869608
Alignment:
| Q |
297 |
aaagttgtgatagcatctctactccttcgattctcagcaccctctttaaattaggta |
353 |
Q |
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||||||||| |||||||||||||||||||| | || |||||||| |||||| |||| |
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| T |
16869664 |
aaagttgtggtagcatctctactccttcgacttccaacaccctctctaaattcggta |
16869608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 38941038 - 38940981
Alignment:
| Q |
297 |
aaagttgtgatagcatctctactccttcgattctcagcaccctctttaaattaggtaa |
354 |
Q |
| |
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||||||||| |||||||||||||||||||| | || |||||||| |||||| ||||| |
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| T |
38941038 |
aaagttgtggtagcatctctactccttcgacttccaacaccctctctaaatttggtaa |
38940981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 7636 - 7696
Alignment:
| Q |
297 |
aaagttgtgatagcatctctactccttcgattctcagcaccctctttaaattaggtaaatc |
357 |
Q |
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||||||||| ||||||||||||||||||| | || |||||||| |||||| |||||||| |
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| T |
7636 |
aaagttgtggtagcatctctactccttcggcttccaacaccctctctaaatttggtaaatc |
7696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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