View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_12 (Length: 437)
Name: NF9779_low_12
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 17 - 415
Target Start/End: Original strand, 191150 - 191549
Alignment:
| Q |
17 |
acatcataagagttgcaacataataaggatcaacgatcccccttttgaaagtgctactaacaaaggagcatacattattaccaataaccccccaaaacat |
116 |
Q |
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| T |
191150 |
acatcataagagttgcaacataataaggatcaacgatcccccttttgaaagtgctactaacaaaggagcatacattattaccaataacctcccaaaacat |
191249 |
T |
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| Q |
117 |
cttataaaagattggttggaattcatctagacctggaactttgtaggacttcatgctcatgagagcttgataaatctctttgttactaatgaacaccaat |
216 |
Q |
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| T |
191250 |
cttataaaagattggttggaattcatctagacctggaactttgtaggacttcatgctcatgagagcttgataaatctctttgttactaatgaacaccaat |
191349 |
T |
|
| Q |
217 |
aagcttgtcttgtgcacttcccctagaggattaggatccacgatcatagtaggatgcacaatattttccttggaacaaaaaagatccttaaaataacttt |
316 |
Q |
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| T |
191350 |
aagcttgtcttgtgcacttcccctagaggattaggatccacgatcatagtaggatgcacaatattttccttggaacaaaaaagatccttaaaataacttt |
191449 |
T |
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| Q |
317 |
aaaacttcaatcttcaacaacattatttgtacaccattcacctgttggaagagtgatcccgca-nnnnnnnncccgatagatagtagtttgagtatggag |
415 |
Q |
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| T |
191450 |
aaaacttcaatcttcaacaacattatttgtacaccattcacctgttggaagagtgatcccgcatttttttttcccgatagatagtagtttgagtatggag |
191549 |
T |
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