View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_13 (Length: 437)
Name: NF9779_low_13
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 19 - 437
Target Start/End: Complemental strand, 1675786 - 1675368
Alignment:
| Q |
19 |
accacgagtgcaggctgtggcgatgtcttacgaggggagcatggtgagtggttgtgcggttttttccaaatatttggggaattgtagtgtgtatatttcg |
118 |
Q |
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| T |
1675786 |
accacgagtgcaggctgtggcgatgtcttacgaggggagcatggtgagtggttgtgcggttttttccaaatatttggggaattgtagtgtgtgtatttcg |
1675687 |
T |
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| Q |
119 |
gagctttggggagtgttgctttgtttggagttggcttggacttgtggtttcaaacgagttgatcttcaaatggattccaagggaaaataccctcaattca |
218 |
Q |
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| T |
1675686 |
gagctttggggagtgttgctttgtttggagttggcttggacttgtggtttcaaacgagttgatcttcaaatggattccaagggcaaataccctcaattca |
1675587 |
T |
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| Q |
219 |
agaagggcagggagtgatagaggttccaggttgatacaacacattcttcattggttggaaaaggattgggaaatgaaagtgtcatccaaatttaaaatca |
318 |
Q |
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| T |
1675586 |
agaagggcagggagggatagaggttccaggttgatacaacacattcttcattggttggaaaaggattgggaaatgaaagtgtcatccaaatttaaaatca |
1675487 |
T |
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| Q |
319 |
tgaagctaatttttgtgtggatgttttggcacctatgggttgtgaaggtggtagttcagtgataatatatatgagcaatgtccagctcatatttggcaat |
418 |
Q |
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| T |
1675486 |
tgaagctaatttttgtgtggatgctttggcacctatgggttgtgaaggtggtagttcagtgataatatatatgagcaatgtccagctcatatttggcaat |
1675387 |
T |
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| Q |
419 |
ttacttttgctgatgtaac |
437 |
Q |
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| T |
1675386 |
ttacttttgctgatgtaac |
1675368 |
T |
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