View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_15 (Length: 421)
Name: NF9779_low_15
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 38885647 - 38886047
Alignment:
| Q |
18 |
cataccatcataattatacatta--cattgatataaaccaaccaaccaattaattctccaatattttaagcatccatgaattaaaactgtggaagtggca |
115 |
Q |
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| T |
38885647 |
cataccatcataattatacattatacattgatataaaccaaccaaccaattaattctccaatattttaagcatccatgaattaaaactgtggaagtggca |
38885746 |
T |
|
| Q |
116 |
tagccaattgatcaagtaaagcagtaacaggtgtagccaacctaggctcataagcaaaaccatgcaactcaaacccatcataaccagcataaggacaagg |
215 |
Q |
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| T |
38885747 |
tagccaattgatcaagtaaagcaataacaggtgtagccaacctaggctcataagcaaaaccatgcaactcaaacccatcataaccagcataaggacaagg |
38885846 |
T |
|
| Q |
216 |
tggaatccactgccatctcttccttccaatatcataaaccaaacccttatcacttcctttaatcataatcacaataaactcaccattcccgacacactca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38885847 |
tggaatccactgccatctcttccttccaatatcataaaccaaacccttatcacttcctttaatcataatcacaataaactcaccattcccaacacactca |
38885946 |
T |
|
| Q |
316 |
aatccattcccattttccatttcagcaaactgaacataaagttgttgtggcattctctcactttcaacccaaacacttccacaaccttgtaaacaccaaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38885947 |
aatccattcccattttccatttcagcaaactgaacataaagttgttgtggcattctctcactttcaacccaaacacttccacaaccttgtaaacaccaaa |
38886046 |
T |
|
| Q |
416 |
c |
416 |
Q |
| |
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| |
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| T |
38886047 |
c |
38886047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 2983945 - 2984009
Alignment:
| Q |
129 |
aagtaaagcagtaacaggtgtagccaacctaggctcataagcaaaaccatgcaactcaaacccat |
193 |
Q |
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| T |
2983945 |
aagtagaggagtaacaggtgtagcaaacctaggctcataagcaaaatcatgcaactcaaacccat |
2984009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 2996509 - 2996437
Alignment:
| Q |
129 |
aagtaaagcagtaacaggtgtagccaacctaggctcataagcaaaaccatgcaactcaaacccatcataacca |
201 |
Q |
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||||| || ||||| |||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2996509 |
aagtagaggagtaaaaggttcagcaaacctaggctcataagcaagaccatgcaactcaaacccatcataacca |
2996437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 2980097 - 2980137
Alignment:
| Q |
157 |
ctaggctcataagcaaaaccatgcaactcaaacccatcata |
197 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2980097 |
ctaggttcataagcaaaaccatgcaactcaaacccatcata |
2980137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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