View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9779_low_16 (Length: 420)
Name: NF9779_low_16
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 53493721 - 53493310
Alignment:
| Q |
1 |
catagcatattgtcgtttgatgtacataaattatatccatcaatcataatcacatatccaggtagtttaagtgggtgagatgaaaagatagaacaatcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53493721 |
catagcatattgtcgtttgatgtacataaattatatccatcaatcataatcacatatccaggtagtttaagtgggtgagatgaaaagatagaacaatcac |
53493622 |
T |
|
| Q |
101 |
tacacttaatttttgaatggagagttggacgtaatttgtcattccaacagcaagaattatgttctttggtcttctaattcaaactctgcaatattaagag |
200 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53493621 |
tacacttaatttgtgaatggacagttgaacgtaatttgtcattccaacagcaagaattatgttctttggtcttctaattcaaactctgcaatattaagag |
53493522 |
T |
|
| Q |
201 |
aattagaaatccaagtatagatagtcagacttaatacacttttattattattcttgataaaattgagaaaagagtgatcatttatatgattttatttagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53493521 |
aattagaaatccaagtatagatagtcagacttaatacacttttattattattcttgataaaattgagaaaagagtgatcatttatatgattttatttagt |
53493422 |
T |
|
| Q |
301 |
gtctcgcgtactatagcttcaggaaactaagcaatacaatatttattgttctcccctagaaaatattttatattttgttctctatatctttgacgatata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53493421 |
gtctcgcgtactatagcttcaggaaactaagcaatacaatatttattgttctcccctagaaaatattttatattttgttctctatatctttgacgatata |
53493322 |
T |
|
| Q |
401 |
ctctctctgctc |
412 |
Q |
| |
|
|||||||||||| |
|
|
| T |
53493321 |
ctctctctgctc |
53493310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 134 - 353
Target Start/End: Complemental strand, 16072748 - 16072530
Alignment:
| Q |
134 |
atttgtcattccaacagcaagaattatgttctttggtcttctaattcaaactctgcaatattaagagaattagaaatccaagtatagatagtcagactt- |
232 |
Q |
| |
|
||||||| ||||||| |||||||| || ||||||||||||| ||| ||||| ||||| | | ||||| |||||||||||||||||||||||||||| |
|
|
| T |
16072748 |
atttgtctttccaaccacaagaattttgatctttggtcttctgatttaaactttgcaacactgagagagttagaaatccaagtatagatagtcagacaac |
16072649 |
T |
|
| Q |
233 |
-aatacacttttattattattcttgataaaattgagaaaagagtgatcatttatatgattttatttagtgtctcgcgtactatagcttcaggaaactaag |
331 |
Q |
| |
|
||||||| | || |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16072648 |
aaatacacctctactatt---ctcaataaaattgagaaaagagtgatcatttatatgattttatttagtgtctcatgtactatagcttcaggaaactaag |
16072552 |
T |
|
| Q |
332 |
caatacaatatttattgttctc |
353 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
16072551 |
caatacattatttattgttctc |
16072530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University