View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9779_low_18 (Length: 409)
Name: NF9779_low_18
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 170 - 402
Target Start/End: Complemental strand, 48074936 - 48074704
Alignment:
| Q |
170 |
caatgttgaaggtgaagggaggaacaagaccaccatgggtaggacttggagctgcagtatgggttcaaatagcagttggaaatgcttacacattcccact |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48074936 |
caatgttgaaggtgaagggaggaacaagaccaccatgggtaggacttggagctgcagtatgggttcaaatagcagttggaaatgcttacacattcccact |
48074837 |
T |
|
| Q |
270 |
ttactcaccttccttcaaatcagttcttggtttcaatcaaagtcaagttactcttcttggtgttgccaatgatattggtgaaaatgttggacttcttcct |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48074836 |
ttactcaccttccttcaaatcagttcttggtttcaatcaaagtcaagttactcttcttggtgttgccaatgatattggtgaaaatgttggacttcttcct |
48074737 |
T |
|
| Q |
370 |
ggtattgtttgcaacaagttccctcctttgctt |
402 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
48074736 |
ggtattgtttgcaacaagttccctccttggctt |
48074704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 323 - 394
Target Start/End: Complemental strand, 48084210 - 48084139
Alignment:
| Q |
323 |
ttcttggtgttgccaatgatattggtgaaaatgttggacttcttcctggtattgtttgcaacaagttccctc |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
48084210 |
ttcttggtgttgccaatgatattggtgaaaatgttggactttttcctggtattgttggcaacaagttccctc |
48084139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 170 - 269
Target Start/End: Complemental strand, 48084349 - 48084242
Alignment:
| Q |
170 |
caatgttgaaggtgaagggaggaacaagaccacca-tgggtaggacttggagctgcag-------tatgggttcaaatagcagttggaaatgcttacaca |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| ||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
48084349 |
caatgttgaaggtgaagggaggaacaagaccaccattgagtaggactaggagctgcagcctgcattatgggtgcaaatagcatttggaaatgcttacaca |
48084250 |
T |
|
| Q |
262 |
ttcccact |
269 |
Q |
| |
|
|||||||| |
|
|
| T |
48084249 |
ttcccact |
48084242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 48075136 - 48074966
Alignment:
| Q |
22 |
acgggtactaaggtagcaaggtatatcaagtaagtaatacaagcacatata------------ataagtatgtttctgacaccgaccattcagtcttctt |
109 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48075136 |
acgggtactaaggtagcaaggtatagcaagtaagtaatacaagcacatacatacgtaccacatataagtatgcttctgacaccgaccattcagtcttctt |
48075037 |
T |
|
| Q |
110 |
--------------cacttatattcatcatcattgtctttgagtttgagttactgttcacataaacaacaac |
167 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48075036 |
tgcctcttgttcttcacttatattcatcatccttg-ctttgagtttgagtaactgttcacataaacaacaac |
48074966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 397
Target Start/End: Original strand, 22531135 - 22531234
Alignment:
| Q |
298 |
ggtttcaatcaaagtcaagttactcttcttggtgttgccaatgatattggtgaaaatgttggacttcttcctggtattgtttgcaacaagttccctcctt |
397 |
Q |
| |
|
||||| || ||||| |||||||| ||||||||||| || ||||||||||||||||| ||||| | ||||||||||||| ||| || |||||||| |||| |
|
|
| T |
22531135 |
ggttttaaccaaagacaagttacacttcttggtgtagctaatgatattggtgaaaacgttggtttgcttcctggtattgcttgtaataagttcccacctt |
22531234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 22531019 - 22531079
Alignment:
| Q |
182 |
tgaagggaggaacaagaccaccatgggtaggacttggagctgcagtatgggttcaaatagc |
242 |
Q |
| |
|
|||| ||||||| |||||||||||||||||| | ||||| ||||| ||||| |||||||| |
|
|
| T |
22531019 |
tgaaaggaggaagcagaccaccatgggtaggattaggagcagcagtttgggtacaaatagc |
22531079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University