View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_19 (Length: 407)
Name: NF9779_low_19
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 192 - 401
Target Start/End: Original strand, 35174844 - 35175079
Alignment:
| Q |
192 |
ttcatctagttgttgttgagaataatgtaggcatgcatttgccttgaaatgaaata--ttattttgttattcccctgtgaatttaaca------------ |
277 |
Q |
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| T |
35174844 |
ttcatttagttgttgttgagaataatgtaggcatgcatttgccttgaaatgaaatattttattttgttattccatggtgaattttacacacacatacaca |
35174943 |
T |
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| Q |
278 |
----------catacacactgtatgtaacgccaaaagta--tccaatttgaaacttatctaatttgggcaaagcaacaagatatcggcaatcgaaaatca |
365 |
Q |
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| T |
35174944 |
tacacatacacatacacactgtatgtaacgccaaaagtatctccaatatgaaacttatctaatttgggcaaagcaacaagatatcggcaatcgaaaatca |
35175043 |
T |
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| Q |
366 |
atggaagatccctctcggcccgcagcaaacaccaaa |
401 |
Q |
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| T |
35175044 |
atggaagatccctatcggcccgcagcaaacaccaaa |
35175079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 35174703 - 35174859
Alignment:
| Q |
18 |
aatattacgtacaaaacaagtgtttctcgtgttaannnnnnnnggactgatcttgtgttgaaattatcaaatccctttccagtggcattaaacaaagtat |
117 |
Q |
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| T |
35174703 |
aatattacgtacaaaacaagtgtttctcgtgttaattttttttggactcatcttgtgttgaaattatcaaatccctttccagtggcattaaacaaagtat |
35174802 |
T |
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| Q |
118 |
ttctannnnnnnattgccgacagcatattaattgatttttgttcatttagttcttgt |
174 |
Q |
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| T |
35174803 |
ttctatttttttattgccgacagcatattaattgatttttgttcatttagttgttgt |
35174859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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