View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9779_low_2 (Length: 568)

Name: NF9779_low_2
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9779_low_2
NF9779_low_2
[»] chr2 (10 HSPs)
chr2 (14-562)||(34176200-34176747)
chr2 (14-347)||(34144079-34144412)
chr2 (14-221)||(34114985-34115192)
chr2 (409-516)||(2248953-2249061)
chr2 (425-512)||(16576215-16576302)
chr2 (446-517)||(16863445-16863515)
chr2 (445-512)||(38576958-38577025)
chr2 (409-504)||(13712948-13713045)
chr2 (469-517)||(13712766-13712814)
chr2 (306-347)||(34115268-34115309)
[»] chr7 (5 HSPs)
chr7 (384-510)||(43208671-43208798)
chr7 (385-486)||(32988565-32988667)
chr7 (425-502)||(27651540-27651616)
chr7 (468-512)||(7463858-7463902)
chr7 (468-512)||(32138907-32138951)
[»] chr8 (4 HSPs)
chr8 (446-516)||(7590332-7590402)
chr8 (446-509)||(34695817-34695880)
chr8 (427-516)||(31475009-31475096)
chr8 (446-486)||(39280941-39280981)
[»] chr4 (2 HSPs)
chr4 (445-516)||(20512844-20512915)
chr4 (465-516)||(25062497-25062548)
[»] scaffold0564 (1 HSPs)
scaffold0564 (383-516)||(5452-5586)
[»] chr5 (6 HSPs)
chr5 (445-513)||(972816-972884)
chr5 (465-504)||(14138552-14138591)
chr5 (461-512)||(41264532-41264583)
chr5 (465-510)||(2243339-2243384)
chr5 (448-512)||(972874-972938)
chr5 (444-516)||(17736916-17736987)
[»] chr3 (2 HSPs)
chr3 (472-512)||(39341213-39341253)
chr3 (465-514)||(54437813-54437862)
[»] chr1 (7 HSPs)
chr1 (468-512)||(10775173-10775217)
chr1 (445-512)||(2534437-2534504)
chr1 (465-504)||(24873772-24873811)
chr1 (465-504)||(24874605-24874644)
chr1 (451-512)||(52432654-52432715)
chr1 (446-510)||(3231946-3232010)
chr1 (445-516)||(38839678-38839747)
[»] scaffold1743 (1 HSPs)
scaffold1743 (445-512)||(771-837)


Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 14 - 562
Target Start/End: Original strand, 34176200 - 34176747
Alignment:
Q  14 catcaaaatcaccttccattagcatgtacacgagctcatcatccttcacctccataccaagcatgaaacaattcatcttcaaactctcgaatgttataag 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34176200 catccaaatcaccttccattagcatgtacacgagctcatcatccttcacctccataccaagcatgaaacaattcatcttcaaactctcaaatgttataag 34176299  T
Q  114 acccttgttgacatccataagcaaatgaaacccgtagcaaagttcacctataaatgcttctgctcctaaactcgcaaccatggatggaaagtagtcctca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34176300 acccttgttgacatccataagcaaatgaaacccgtagcaaagttcacctataaatgcttctgctcctaaactcgcaaccatggatggaaagtagtcctca 34176399  T
Q  214 aaatccaagtcaaaatccaactccatgtggaaacttgtgagtgaaacttcaagtagaagttgctaggaacaatgtgaaagcggatcaattattagcttgt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  34176400 aaatccaagtcaaaatccaactccatgtggaaacttgtgagtgaaacttcaagtagaagttgctaggaacaatgtgaaaggggattaattattagcttgt 34176499  T
Q  314 gctagaagggtgttgtaagttgtgctttttatatnnnnnnnnttgtgttttctaaattgtgtgaaactaagttttttctacattatcccttgaataattg 413  Q
    ||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34176500 gctagaagggtgttgtaagttgtgctttttatat-aaaaaaattgtgttttctaaattgtgtgaaactaagttttttctacattatcccttgaataattg 34176598  T
Q  414 agggtaatataccctatcagagaacaattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatctt 513  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34176599 agggtaatataccctattagagaacaattatattttcttcatctttatttctacaatcagttaccattttcatcttaagaatatcaaacttcttcatctt 34176698  T
Q  514 ctttgttactcttacaatcagttaccattttcatcttaggaacaccaaa 562  Q
    |||  |||||||||||||||||||| ||| ||| |||||||||| ||||    
T  34176699 cttcattactcttacaatcagttactattatcaccttaggaacatcaaa 34176747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 347
Target Start/End: Original strand, 34144079 - 34144412
Alignment:
Q  14 catcaaaatcaccttccattagcatgtacacgagctcatcatccttcacctccataccaagcatgaaacaattcatcttcaaactctcgaatgttataag 113  Q
    |||| |||||||||||||||||||||||||||||||| || ||| |||||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  34144079 catccaaatcaccttccattagcatgtacacgagctcttcgtccctcacctccaagccaagcatgaaacaattcatcttcaaactctcaaatgttataag 34144178  T
Q  114 acccttgttgacatccataagcaaatgaaacccgtagcaaagttcacctataaatgcttctgctcctaaactcgcaaccatggatggaaagtagtcctca 213  Q
    |||||||||| |||||||||||||||||||||||| | ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  34144179 acccttgttggcatccataagcaaatgaaacccgttgtaaagttcacctataaaaccttctgctcctaaactcgcaaccatggatggaaagtagtcctca 34144278  T
Q  214 aaatccaagtcaaaatccaactccatgtggaaacttgtgagtgaaacttcaagtagaagttgctaggaacaatgtgaaagcggatcaattattagcttgt 313  Q
    ||||||| || |||||| || |||||||| |||  |||||||||||||| ||||||| |||||||| ||||||| |||||  ||| ||||||||||||||    
T  34144279 aaatccatgtaaaaatctaaatccatgtgaaaaggtgtgagtgaaactttaagtagaggttgctagtaacaatgcgaaaggagattaattattagcttgt 34144378  T
Q  314 gctagaagggtgttgtaagttgtgctttttatat 347  Q
    |||||||||||||  |||||||||||||||||||    
T  34144379 gctagaagggtgtgttaagttgtgctttttatat 34144412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 34114985 - 34115192
Alignment:
Q  14 catcaaaatcaccttccattagcatgtacacgagctcatcatccttcacctccataccaagcatgaaacaattcatcttcaaactctcgaatgttataag 113  Q
    |||| |||||||| |||||||||||||||||||| || |||||| |||||||||  |||||||||||||||||||||||||| ||||| |||||||||||    
T  34114985 catccaaatcaccctccattagcatgtacacgagttcttcatccctcacctccaagccaagcatgaaacaattcatcttcaagctctcaaatgttataag 34115084  T
Q  114 acccttgttgacatccataagcaaatgaaacccgtagcaaagttcacctataaatgcttctgctcctaaactcgcaaccatggatggaaagtagtcctca 213  Q
    ||| ||||| ||||||||||||||| |||| || | ||||||||||||||||||  |||||||||||||||  | || ||||||||||||||||||||||    
T  34115085 acctttgttcacatccataagcaaacgaaatccattgcaaagttcacctataaacccttctgctcctaaacgtgaaatcatggatggaaagtagtcctca 34115184  T
Q  214 aaatccaa 221  Q
    ||||||||    
T  34115185 aaatccaa 34115192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 409 - 516
Target Start/End: Complemental strand, 2249061 - 2248953
Alignment:
Q  409 aattgagggtaatatacc-ctatcagagaacaattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttctt 507  Q
    |||||||| |||| |||| |||||| |||| ||| ||||||||||||||||||||  || ||| ||||||||||||||| | || || || |||||||||    
T  2249061 aattgaggataatttacctctatcaaagaaaaatcatattttcttcatctttattcttagaattagttaccattttcatctcaaaaacattaaacttctt 2248962  T
Q  508 catcttctt 516  Q
    |||||||||    
T  2248961 catcttctt 2248953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 512
Target Start/End: Original strand, 16576215 - 16576302
Alignment:
Q  425 ccctatcagagaacaattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 512  Q
    |||||||| |||| |||||| ||||||||| |||| ||  |||||||| ||||||||||| | | ||||| |||||||||||||||||    
T  16576215 ccctatcaaagaaaaattatcttttcttcaccttttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatct 16576302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 446 - 517
Target Start/End: Original strand, 16863445 - 16863515
Alignment:
Q  446 ttttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttcttt 517  Q
    |||||||| ||||||||  |||||||||||||||||||||| | ||||| |||||| |||||||||||||||    
T  16863445 ttttcttc-tctttattcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttcttt 16863515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 512
Target Start/End: Complemental strand, 38577025 - 38576958
Alignment:
Q  445 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 512  Q
    ||||||||||| ||||||| || ||||||||||||||||||| | ||||| || ||| ||||||||||    
T  38577025 attttcttcatatttatttttataatcagttaccattttcatctaaagaacattaaagttcttcatct 38576958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 504
Target Start/End: Complemental strand, 13713045 - 13712948
Alignment:
Q  409 aattgagggtaatataccctatcagagaacaat--tatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaactt 504  Q
    |||||||| |||| |||||||||| |||| |||  |||||||| || || |||||| |||||||| ||||||||||| || |||| ||| ||||||||    
T  13713045 aattgaggataatttaccctatcaaagaaaaatcatatattttttttatatttattcctacaatcggttaccatttttatcttaaaaatttcaaactt 13712948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 517
Target Start/End: Complemental strand, 13712814 - 13712766
Alignment:
Q  469 atcagttaccattttcattttaagaatatcaaacttcttcatcttcttt 517  Q
    |||||||||||||| ||| ||||||| |||||||||||| |||||||||    
T  13712814 atcagttaccatttccatcttaagaacatcaaacttctttatcttcttt 13712766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 34115268 - 34115309
Alignment:
Q  306 tagcttgtgctagaagggtgttgtaagttgtgctttttatat 347  Q
    |||||||||||||||||||||  |||||||||||| ||||||    
T  34115268 tagcttgtgctagaagggtgtgttaagttgtgcttcttatat 34115309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 384 - 510
Target Start/End: Original strand, 43208671 - 43208798
Alignment:
Q  384 gttttttctacattatcccttgaataattgagggtaatata-ccctatcagagaacaa-ttatattttcttcatctttatttctacaatcagttaccatt 481  Q
    |||||||||||||||||||||||  ||||||||||||| || |||||||  | || || |||| |||||||||||||||||  |||||||| ||||||||    
T  43208671 gttttttctacattatcccttgatgaattgagggtaatttatccctatcgaataaaaagttat-ttttcttcatctttattcttacaatcaattaccatt 43208769  T
Q  482 ttcattttaagaatatcaaacttcttcat 510  Q
    || ||||||||||||||||| | ||||||    
T  43208770 tttattttaagaatatcaaattccttcat 43208798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 385 - 486
Target Start/End: Complemental strand, 32988667 - 32988565
Alignment:
Q  385 ttttttctacattatcccttgaataattgagggtaatataccc-tatcagagaacaattatattttcttcatctttatttctacaatcagttaccatttt 483  Q
    |||||| |||||||||||| ||  ||||| ||||||| ||| | ||||| |||| ||| ||||||||||||||||||||  ||||||||| || ||||||    
T  32988667 ttttttatacattatccctcgatgaattgggggtaatttacacatatcaaagaaaaatcatattttcttcatctttattcttacaatcagctatcatttt 32988568  T
Q  484 cat 486  Q
    |||    
T  32988567 cat 32988565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 502
Target Start/End: Complemental strand, 27651616 - 27651540
Alignment:
Q  425 ccctatcagagaacaattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaac 502  Q
    |||||||| |||| ||||   |||||||||||||||||| |||||| ||| ||||||||||| | ||||| |||||||    
T  27651616 ccctatcaaagaaaaattcatttttcttcatctttatttttacaat-agtaaccattttcatctcaagaacatcaaac 27651540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 512
Target Start/End: Original strand, 7463858 - 7463902
Alignment:
Q  468 aatcagttaccattttcattttaagaatatcaaacttcttcatct 512  Q
    |||| |||| ||||||||||| ||||| |||||||||||||||||    
T  7463858 aatcggttatcattttcatttgaagaacatcaaacttcttcatct 7463902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 512
Target Start/End: Complemental strand, 32138951 - 32138907
Alignment:
Q  468 aatcagttaccattttcattttaagaatatcaaacttcttcatct 512  Q
    ||||| ||||||||||||| ||||||| |||||| ||||||||||    
T  32138951 aatcaattaccattttcatcttaagaacatcaaaattcttcatct 32138907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 446 - 516
Target Start/End: Complemental strand, 7590402 - 7590332
Alignment:
Q  446 ttttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 516  Q
    |||||||| ||||||||  ||||||| ||||||| |||||||| ||||| |||||| ||||||||||||||    
T  7590402 ttttcttcgtctttattcttacaatcggttaccaatttcatttcaagaacatcaaatttcttcatcttctt 7590332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 509
Target Start/End: Original strand, 34695817 - 34695880
Alignment:
Q  446 ttttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttca 509  Q
    |||||||||||||||||  |||||||||||| ||||||| ||| || | ||||||| |||||||    
T  34695817 ttttcttcatctttattcttacaatcagttatcattttcttttcaaaattatcaaatttcttca 34695880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 516
Target Start/End: Original strand, 31475009 - 31475096
Alignment:
Q  427 ctatcagagaacaattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 516  Q
    |||||| |||| ||| ||||||||||| |||| |||| |  |||||||||| ||||| || | ||||| |||||||||||||||||||||    
T  31475009 ctatcaaagaaaaatcatattttcttcctctt-atttttg-aatcagttactatttttatctcaagaacatcaaacttcttcatcttctt 31475096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 486
Target Start/End: Original strand, 39280941 - 39280981
Alignment:
Q  446 ttttcttcatctttatttctacaatcagttaccattttcat 486  Q
    |||||||||||||||||  || |||||||||||||||||||    
T  39280941 ttttcttcatctttattcttaaaatcagttaccattttcat 39280981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 516
Target Start/End: Complemental strand, 20512915 - 20512844
Alignment:
Q  445 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 516  Q
    ||||||||||||||||||| || ||||| ||  ||||||||| |||  || |||||||||||||||||||||    
T  20512915 attttcttcatctttatttttaaaatcaattgtcattttcatcttataaacatcaaacttcttcatcttctt 20512844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 465 - 516
Target Start/End: Original strand, 25062497 - 25062548
Alignment:
Q  465 tacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 516  Q
    |||||||| ||||| ||||||| | |||||||||||||||||||||||||||    
T  25062497 tacaatcaattaccgttttcatctcaagaatatcaaacttcttcatcttctt 25062548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 516
Target Start/End: Complemental strand, 5586 - 5452
Alignment:
Q  383 agttttttctacattatcccttgaataattgagggtaatataccc-tatcagagaacaattatattttcttcatctttatttctacaatcagttaccatt 481  Q
    |||||||||||||||| | ||| |  |||||| |||||| ||||| ||||| | || ||| |  ||||||||||||||||   || |||||| ||| |||    
T  5586 agttttttctacattacctcttaacgaattgaaggtaatttacccatatcaaataaaaataactttttcttcatctttatccttaaaatcaggtacaatt 5487  T
Q  482 ttcattttaagaatatcaaacttcttcatcttctt 516  Q
    ||||| | || || |||||||||||||||||||||    
T  5486 ttcatctcaaaaagatcaaacttcttcatcttctt 5452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 513
Target Start/End: Original strand, 972816 - 972884
Alignment:
Q  445 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatctt 513  Q
    ||||| ||| ||||||||| || ||| ||||| ||||||||| | ||||| ||||||||||||||||||    
T  972816 atttttttcctctttatttttaaaattagttatcattttcatctcaagaacatcaaacttcttcatctt 972884  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 504
Target Start/End: Original strand, 14138552 - 14138591
Alignment:
Q  465 tacaatcagttaccattttcattttaagaatatcaaactt 504  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  14138552 tacaatcaattaccattttcatcttaagaatatcaaactt 14138591  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 512
Target Start/End: Original strand, 41264532 - 41264583
Alignment:
Q  461 tttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 512  Q
    ||||||||||||||||| |||||||| | ||||| |||||| ||||||||||    
T  41264532 tttctacaatcagttacaattttcatatcaagaacatcaaatttcttcatct 41264583  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 510
Target Start/End: Complemental strand, 2243384 - 2243339
Alignment:
Q  465 tacaatcagttaccattttcattttaagaatatcaaacttcttcat 510  Q
    |||||| ||||||||||||||| | ||||| |||||||||||||||    
T  2243384 tacaattagttaccattttcatctcaagaacatcaaacttcttcat 2243339  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 512
Target Start/End: Original strand, 972874 - 972938
Alignment:
Q  448 ttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 512  Q
    |||||||||||||||| |  |||||||| ||||||||||   ||||| |||||| ||||||||||    
T  972874 ttcttcatctttatttttgaaatcagttgccattttcatcacaagaaaatcaaatttcttcatct 972938  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 516
Target Start/End: Complemental strand, 17736987 - 17736916
Alignment:
Q  444 tattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 516  Q
    |||||| ||||||||||| | |||||||  |||||||||| || |||||||||||||| ||||| | ||||||    
T  17736987 tatttttttcatctttatct-tacaatcgattaccatttttatcttaagaatatcaaatttctttaccttctt 17736916  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 512
Target Start/End: Original strand, 39341213 - 39341253
Alignment:
Q  472 agttaccattttcattttaagaatatcaaacttcttcatct 512  Q
    ||||||||||||||| ||||||||||||||||| |||||||    
T  39341213 agttaccattttcatcttaagaatatcaaactttttcatct 39341253  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 514
Target Start/End: Original strand, 54437813 - 54437862
Alignment:
Q  465 tacaatcagttaccattttcattttaagaatatcaaacttcttcatcttc 514  Q
    ||||||||||||||||||| || | || || |||||||||||||||||||    
T  54437813 tacaatcagttaccattttaatctcaaaaacatcaaacttcttcatcttc 54437862  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 512
Target Start/End: Original strand, 10775173 - 10775217
Alignment:
Q  468 aatcagttaccattttcattttaagaatatcaaacttcttcatct 512  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||    
T  10775173 aatcaattaccattttcatcttaagaacatcaaacttcttcatct 10775217  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 512
Target Start/End: Complemental strand, 2534504 - 2534437
Alignment:
Q  445 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 512  Q
    ||||||||||||||||||| || ||| | |||||| |||||| | || || |||||||||||||||||    
T  2534504 attttcttcatctttatttttaaaataatttaccactttcatctcaaaaacatcaaacttcttcatct 2534437  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 504
Target Start/End: Original strand, 24873772 - 24873811
Alignment:
Q  465 tacaatcagttaccattttcattttaagaatatcaaactt 504  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  24873772 tacaatcaattaccattttcattttaagaagatcaaactt 24873811  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 504
Target Start/End: Original strand, 24874605 - 24874644
Alignment:
Q  465 tacaatcagttaccattttcattttaagaatatcaaactt 504  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  24874605 tacaatcaattaccattttcattttaagaagatcaaactt 24874644  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 512
Target Start/End: Original strand, 52432654 - 52432715
Alignment:
Q  451 ttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 512  Q
    ||||||||||||  || ||||| ||||||||||||| | ||||| || ||||||||||||||    
T  52432654 ttcatctttattcttataatcaattaccattttcatctcaagaacattaaacttcttcatct 52432715  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 510
Target Start/End: Original strand, 3231946 - 3232010
Alignment:
Q  446 ttttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcat 510  Q
    |||||||||| ||||| | ||||||||||| | |||||||| | ||||| | |||||||||||||    
T  3231946 ttttcttcatgtttatctttacaatcagttgctattttcatctcaagaacaacaaacttcttcat 3232010  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 516
Target Start/End: Complemental strand, 38839747 - 38839678
Alignment:
Q  445 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 516  Q
    ||||| ||||||||||||  |||||| |||||  |||||||| | ||||| ||||||| |||||||||||||    
T  38839747 atttttttcatctttattcttacaattagtta--attttcatctcaagaacatcaaacctcttcatcttctt 38839678  T

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Target: scaffold1743 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 512
Target Start/End: Original strand, 771 - 837
Alignment:
Q  445 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 512  Q
    ||||||||||| ||||||| |||| ||| ||| ||||||| ||| ||| |||||||||||||||||||    
T  771 attttcttcatttttatttttaca-tcatttatcattttcctttcaagtatatcaaacttcttcatct 837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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