View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9779_low_21 (Length: 404)
Name: NF9779_low_21
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 25059019 - 25059252
Alignment:
| Q |
16 |
aagatgagaatcattaccaccaaagtacacaatcgccaatgctggttggtctcgttgctcaatggaaatctgtattagagatgaccaataacacaagggt |
115 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25059019 |
aagatgagaatcattaccaccaaaatacacaatcgccaatgctggttggtctcgttgctcaatggaaatctttattagagatgaccaataacacaagggt |
25059118 |
T |
|
| Q |
116 |
taatcattgtcgacaaaattttataatcacattcaaatataaacaaaaacttatgtgtgttgtgaaccttattcagcaagatcattatagtagtatgttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25059119 |
caatcattgtcgacaaaattttataatcacattcaaatataaacaaaaacttatgtgtgttgtgaaccttattcagcaagatcatta---tagtatgttt |
25059215 |
T |
|
| Q |
216 |
aatactatgtaaatcaatataatcttctcaatttgac |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25059216 |
aatactatgtaaatcaatataatcttctcaatttgac |
25059252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 307 - 387
Target Start/End: Original strand, 25059306 - 25059386
Alignment:
| Q |
307 |
ggacaatacttgtagatcaataccttaggaaaaatatcttccacaacttctagaccacgctttgaattccaaccagcatat |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
25059306 |
ggacaatacttgtagatcaataccttaggaaaaatatcatccacaacttgtagaccacgcgttgaattccaaccagcatat |
25059386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 25063794 - 25063835
Alignment:
| Q |
22 |
agaatcattaccaccaaagtacacaatcgccaatgctggttg |
63 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
25063794 |
agaatcattaccaccaaagtagacaatcaccaatgctggttg |
25063835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 25084997 - 25085036
Alignment:
| Q |
24 |
aatcattaccaccaaagtacacaatcgccaatgctggttg |
63 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
25084997 |
aatcattaccaccaaagtacacaatcaccaatgatggttg |
25085036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 25091048 - 25091089
Alignment:
| Q |
22 |
agaatcattaccaccaaagtacacaatcgccaatgctggttg |
63 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
25091048 |
agaatcattaccaccaaagtacacaatcatcaattctggttg |
25091089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University