View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_22 (Length: 388)
Name: NF9779_low_22
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 29282891 - 29283197
Alignment:
| Q |
1 |
aagaaagaagagagtggtgctactgctatggttaatattgatgaagaaggaatgaagagaatgatgtattattatcaatatcctccactttatgtgattg |
100 |
Q |
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| T |
29282891 |
aagaaagaagagagtggtgctactgctatggttaatattgatgaagaaggaatgaagagaatgatgtattattatcaatatcctccactttatgtgattg |
29282990 |
T |
|
| Q |
101 |
aacgtactccaccacctcaactattcagtgatgaaaaccctaatgcatgcagcatttcataaag----tcatcatatgaataatagagagaacaatatga |
196 |
Q |
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| T |
29282991 |
aacgtactccaccacctcaactattcagtgatgaaaatcctaatgcatgcatcatttcataaagtccatcatcatatgaataatagagagaacaatatga |
29283090 |
T |
|
| Q |
197 |
taannnnnnngagttttgttggtggaatatggagaggaaaaaatgtgtctaaatggaatcatcatatgatgataatgagttgattaatgatatatcgttc |
296 |
Q |
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| T |
29283091 |
aatttttttggagttttgttggtggaatatggagaggaaaaaatgtgtctaaatggaatcatcatgtgatgataatgagttgattaatgatatatcgttc |
29283190 |
T |
|
| Q |
297 |
tgtcttc |
303 |
Q |
| |
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||||||| |
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| T |
29283191 |
tgtcttc |
29283197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 59 - 301
Target Start/End: Complemental strand, 6469938 - 6469698
Alignment:
| Q |
59 |
gaatgatgtattattatcaatatcctccactttatgtgattgaacgtactccaccacctcaactattcagtgatgaaaaccctaatgcatgcagcatttc |
158 |
Q |
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| T |
6469938 |
gaatgatgtattattatcaatatcctccactttatgtgattgaacgtactccacctcctcaactattcagtgatgaaaatcctaatgcatgcagcatttc |
6469839 |
T |
|
| Q |
159 |
ataaagtcatcatatgaataatagagagaacaatatgataannnnnnngagttttgttggtggaatatggagaggaaaaaatgtgtctaaatggaatcat |
258 |
Q |
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||||||||||||||||||||| |||||||||||||||||| | ||||||||| ||||||||| |||||| |||||||| |||||||||||||| |
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| T |
6469838 |
ataaagtcatcatatgaataacagagagaacaatatgata--ttttttgtgttttgttgatggaatatgtagaggagaaaatgtgcctaaatggaatcat |
6469741 |
T |
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| Q |
259 |
catatgatgataatgagttgattaatgatatatcgttctgtct |
301 |
Q |
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| T |
6469740 |
cacatgatgataataagttgatcaatgatatatcgttctgtct |
6469698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 42524711 - 42524657
Alignment:
| Q |
109 |
ccaccacctcaactattcagtgatgaaaaccctaatgcatgcagcatttcataaa |
163 |
Q |
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|||||||||||||| || ||||||||||| || |||||||| |||||||||||| |
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| T |
42524711 |
ccaccacctcaactctttagtgatgaaaatcccaatgcatgttgcatttcataaa |
42524657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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