View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_23 (Length: 385)
Name: NF9779_low_23
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 10238293 - 10238651
Alignment:
| Q |
18 |
aattctcaccaccttattatgatcacgtgagtactctatttcctccacaaacaaatcgactataaaagctaaaaagcccaatttctattttcttgtgctt |
117 |
Q |
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| T |
10238293 |
aattctcaccaccttattatgatcatgtgagtactctatttcctccacaaacaaatcgactataaaagctaaaaagcccaatttctattttcttgtgctt |
10238392 |
T |
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| Q |
118 |
ctttccatttaccttccctttccacttgatcttctcaaaaaattcacttaaattgatccacttggaagaacctttgccatttccatttgaaatcatcact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10238393 |
ctttccatttaccttccctttccacttgatcttctcaaaaaattcacttaaattgatccacttggaagaacctttgccatttccatttgaaatcatcact |
10238492 |
T |
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| Q |
218 |
tcatcaagattagagaactttgtgatgatttgttttgatccaccaagatgtggccactccatcatttgtctctcaattatatgagaaagtgtaaccaatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
10238493 |
tcatcaagattagagaactttgtgatgatttgttttgatccaccaagatgtggccactccctcatttgtctctcaattatatgagaaagtgtgaccaatt |
10238592 |
T |
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| Q |
318 |
cacatgagtcatataatggactaccacaatcccatatgggaaatattgatctttcatct |
376 |
Q |
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| T |
10238593 |
cacatgagtcatataatggactaccacaatcccatatgggaaatattgatctttcatct |
10238651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 10269927 - 10270208
Alignment:
| Q |
18 |
aattctcaccaccttattatgatcacgtgagtactctatttcctccacaaacaaatcgactataaaagctaaaaagcccaatttctattttcttgtgc-t |
116 |
Q |
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|||||| | ||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||| ||||| | |
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| T |
10269927 |
aattctgagcaccttattttgttcatgtgagtactctatttcctccacaaacaaatcgactataaaagctaattagtccaatttatattttcctgtgctt |
10270026 |
T |
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| Q |
117 |
tctttccatttaccttccctttc--cacttgatcttctcaaaaaattcacttaaattgatccacttggaaga----acctttgccatttccatttg---- |
206 |
Q |
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| T |
10270027 |
tgtttccctttatcttcctcttctacatatgatcttctcaaaaagttcactcaaattgaaccacttggaagattatatctttaccatttccatttggaat |
10270126 |
T |
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| Q |
207 |
aaatcatcacttcatcaagattagagaactttgtgatgatttgttttgatccaccaagatgtggccactccatcatttgtct |
288 |
Q |
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||| |||||||| ||||||||| | |||||||||||||||||||||||| ||||| ||| ||| |||||||| |||||||| |
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| T |
10270127 |
taattatcacttcgtcaagattataaaactttgtgatgatttgttttgattcaccaggatatggtcactccattatttgtct |
10270208 |
T |
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