View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9779_low_24 (Length: 384)

Name: NF9779_low_24
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9779_low_24
NF9779_low_24
[»] chr3 (13 HSPs)
chr3 (18-367)||(53493699-53494049)
chr3 (178-255)||(16072927-16073004)
chr3 (286-363)||(16072834-16072911)
chr3 (159-225)||(402458-402524)
chr3 (157-224)||(9832672-9832739)
chr3 (157-220)||(18405752-18405815)
chr3 (157-227)||(20170628-20170698)
chr3 (166-228)||(25447158-25447220)
chr3 (120-206)||(31365123-31365208)
chr3 (157-223)||(39980815-39980881)
chr3 (157-222)||(43046751-43046815)
chr3 (18-58)||(16073136-16073176)
chr3 (158-222)||(26990144-26990208)
[»] chr8 (14 HSPs)
chr8 (152-225)||(38602408-38602481)
chr8 (111-225)||(30251370-30251483)
chr8 (157-206)||(1058012-1058061)
chr8 (157-233)||(43717842-43717918)
chr8 (151-225)||(12496988-12497062)
chr8 (111-205)||(32840922-32841015)
chr8 (155-225)||(35534529-35534599)
chr8 (26-62)||(14280490-14280526)
chr8 (170-220)||(12010979-12011029)
chr8 (157-223)||(36963272-36963338)
chr8 (195-229)||(43043792-43043826)
chr8 (194-230)||(12224809-12224845)
chr8 (157-201)||(28763454-28763498)
chr8 (157-205)||(35749506-35749554)
[»] chr7 (11 HSPs)
chr7 (157-220)||(18765370-18765433)
chr7 (111-225)||(5947282-5947395)
chr7 (157-230)||(36517663-36517736)
chr7 (157-225)||(4970708-4970776)
chr7 (157-225)||(18962499-18962567)
chr7 (160-232)||(19302472-19302544)
chr7 (157-221)||(34464141-34464205)
chr7 (151-222)||(35056755-35056826)
chr7 (21-61)||(4970878-4970918)
chr7 (160-220)||(9210910-9210970)
chr7 (159-215)||(43694494-43694550)
[»] chr6 (4 HSPs)
chr6 (111-230)||(848030-848147)
chr6 (157-222)||(10645304-10645369)
chr6 (111-215)||(2455032-2455132)
chr6 (168-225)||(35069528-35069585)
[»] chr2 (11 HSPs)
chr2 (157-222)||(30331837-30331902)
chr2 (157-224)||(26143559-26143624)
chr2 (157-232)||(15305760-15305835)
chr2 (157-223)||(28677577-28677644)
chr2 (111-225)||(45229552-45229665)
chr2 (157-226)||(27317465-27317534)
chr2 (155-225)||(4607009-4607079)
chr2 (157-219)||(31561664-31561726)
chr2 (178-223)||(18179056-18179101)
chr2 (180-229)||(39659421-39659470)
chr2 (157-225)||(42419879-42419947)
[»] chr1 (8 HSPs)
chr1 (157-222)||(50644174-50644239)
chr1 (157-223)||(33204312-33204378)
chr1 (157-225)||(2295182-2295250)
chr1 (164-219)||(15784410-15784465)
chr1 (151-206)||(29904831-29904886)
chr1 (157-223)||(3233933-3233999)
chr1 (160-230)||(36872817-36872887)
chr1 (111-171)||(37473444-37473503)
[»] chr5 (11 HSPs)
chr5 (111-223)||(3932594-3932705)
chr5 (157-222)||(34736446-34736511)
chr5 (157-225)||(15246919-15246987)
chr5 (158-221)||(9107177-9107240)
chr5 (111-225)||(6521118-6521232)
chr5 (112-146)||(34669724-34669758)
chr5 (157-206)||(12425659-12425708)
chr5 (157-206)||(15015929-15015978)
chr5 (157-222)||(39594893-39594958)
chr5 (164-225)||(40426858-40426919)
chr5 (26-62)||(10639898-10639934)
[»] chr4 (12 HSPs)
chr4 (111-223)||(13126494-13126605)
chr4 (157-225)||(21731572-21731640)
chr4 (157-225)||(29388700-29388768)
chr4 (111-225)||(25904139-25904252)
chr4 (151-223)||(8705021-8705093)
chr4 (161-221)||(15173223-15173283)
chr4 (157-225)||(54426129-54426197)
chr4 (160-223)||(27043748-27043811)
chr4 (157-216)||(40174643-40174702)
chr4 (158-225)||(53294030-53294097)
chr4 (157-223)||(49940085-49940151)
chr4 (160-225)||(39691065-39691130)


Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 53494049 - 53493699
Alignment:
Q  18 aatcttacataacctatttctatagcaaaaggtaaaattaaattacannnnnnn-atatatgctaaagttgttttcattcatataactcataagataagc 116  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  53494049 aatcttacataacctatttttatagtaaaaggtaaaattaaattacattgtttttatatatgctaaagttgttttcattcatataactcataagataagc 53493950  T
Q  117 tgtaaaaagcttatgaaaaatgtcattagtggggttttacaagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  53493949 tgtaaaaagcttatgaaaaatgtcattagtggggttttacaagttctcccaaacaatcttgcaaaacttatgtaattagataagctcaaacaaatcaatc 53493850  T
Q  217 caaacaggctctaagtgtgcaatgtacatgtcccttttgcttttgttacaatcaatccaaacagtcttgcaaatttctcaccatgcaagattaattactt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53493849 caaacaggctctaagtgtgcaatgtacatgtcccttttgcttttgttacaatcaatccaaacagtcttgcaaatttctcaccatgcaagattaattactt 53493750  T
Q  317 ttagagaacaagatgtgcactaccatgtcatagcatattgtcgtttgatgt 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53493749 ttagagaacaagatgtgcactaccatgtcatagcatattgtcgtttgatgt 53493699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 16073004 - 16072927
Alignment:
Q  178 caaaacttatgtaattagataagctcaaacaaatcaatccaaacaggctctaagtgtgcaatgtacatgtcccttttg 255  Q
    |||||||||||| |||||||||||||||| || ||||||||||||||  ||||||||||||||||||| |||||||||    
T  16073004 caaaacttatgtcattagataagctcaaataagtcaatccaaacaggtcctaagtgtgcaatgtacatatcccttttg 16072927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 363
Target Start/End: Complemental strand, 16072911 - 16072834
Alignment:
Q  286 caaatttctcaccatgcaagattaattacttttagagaacaagatgtgcactaccatgtcatagcatattgtcgtttg 363  Q
    |||| ||||||||||||||||| |||||||||||  ||| |  | |||||||||||||||||||||||  ||||||||    
T  16072911 caaacttctcaccatgcaagatcaattacttttaaggaaaataacgtgcactaccatgtcatagcataccgtcgtttg 16072834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 402524 - 402458
Alignment:
Q  159 gttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggc 225  Q
    ||||||||||||||||||||||||||||||| | | ||||| |||||| |  |||| ||||||||||    
T  402524 gttctcccaaacagtcttgcaaaacttatgttagttgataaactcaaataggtcaacccaaacaggc 402458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 9832739 - 9832672
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacagg 224  Q
    ||||||||||||||||| |  |||||||||||| | || ||||||||||| || |||||| |||||||    
T  9832739 aagttctcccaaacagtttgacaaaacttatgtcaataaataagctcaaataagtcaatctaaacagg 9832672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 18405815 - 18405752
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaa 220  Q
    |||||||  ||||||||||  |||||||||||| | |||||||||||||| ||| |||||||||    
T  18405815 aagttcttgcaaacagtctcacaaaacttatgtcagtagataagctcaaataaaccaatccaaa 18405752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 20170698 - 20170628
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggctc 227  Q
    |||||||  ||||||||||  | |||||||||| | |||||||||||||| ||  ||||||||||||||||    
T  20170698 aagttctaacaaacagtctcactaaacttatgtcactagataagctcaaataagccaatccaaacaggctc 20170628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 25447220 - 25447158
Alignment:
Q  166 caaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggctct 228  Q
    ||||||||||  |||||||||||| | ||||||| |||||| || ||||||||||||| ||||    
T  25447220 caaacagtctcacaaaacttatgtcagtagataaactcaaataagtcaatccaaacagactct 25447158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 206
Target Start/End: Complemental strand, 31365208 - 31365123
Alignment:
Q  120 aaaaagcttatgaaaaatgtcattagtggggttttacaagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaa 206  Q
    |||||||||||||||| |||||| ||  |  ||| | |||||||||||||||||||  |||||||||||  | ||||||||||||||    
T  31365208 aaaaagcttatgaaaattgtcataagctgc-tttcataagttctcccaaacagtctcacaaaacttatgccaatagataagctcaaa 31365123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 39980815 - 39980881
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacag 223  Q
    ||||||||  |||||||||  |||||||||||  | |||||||||||||||||  ||||||||||||    
T  39980815 aagttctcttaaacagtctcacaaaacttatgctagtagataagctcaaacaagccaatccaaacag 39980881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 43046751 - 43046815
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaaca 222  Q
    |||||||||||||||||||  |||||| ||||||| |||||||| ||||| || |||||| |||||    
T  43046751 aagttctcccaaacagtctcacaaaacatatgtaa-tagataagttcaaataagtcaatctaaaca 43046815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 16073176 - 16073136
Alignment:
Q  18 aatcttacataacctatttctatagcaaaaggtaaaattaa 58  Q
    |||||| ||||| |||||||||||||||||| |||||||||    
T  16073176 aatcttgcataagctatttctatagcaaaagttaaaattaa 16073136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 26990208 - 26990144
Alignment:
Q  158 agttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaaca 222  Q
    |||||||||||||| | | ||||| | ||||| | |||||||||||||| || ||||||||||||    
T  26990208 agttctcccaaacaatatcgcaaagcctatgtcagtagataagctcaaataagtcaatccaaaca 26990144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 38602408 - 38602481
Alignment:
Q  152 tttacaagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggc 225  Q
    |||| |||||||||||||||| ||  |||||||||||| | |||||||||||||| || |||||||||||||||    
T  38602408 tttataagttctcccaaacagcctcacaaaacttatgtcagtagataagctcaaataagtcaatccaaacaggc 38602481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 111 - 225
Target Start/End: Complemental strand, 30251483 - 30251370
Alignment:
Q  111 ataagctgtaaaaagcttatgaaaaatgtcattagtggggttttacaagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaa 210  Q
    ||||||||||||||||||||||||||||  || ||  |  |||   |||||||||||||||||||  | |||||||||| | |||||||||||||| ||     
T  30251483 ataagctgtaaaaagcttatgaaaaatgcaataagctgt-tttcgtaagttctcccaaacagtctcacgaaacttatgtcagtagataagctcaaataag 30251385  T
Q  211 tcaatccaaacaggc 225  Q
     ||||||||||||||    
T  30251384 ccaatccaaacaggc 30251370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 1058061 - 1058012
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaa 206  Q
    |||||||||||||||||||  |||||||||||||| ||||||||||||||    
T  1058061 aagttctcccaaacagtctcacaaaacttatgtaagtagataagctcaaa 1058012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 43717918 - 43717842
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggctctaagtg 233  Q
    ||||||||||||| |||||  |||||||||||| | |||||||||||||| ||  ||||||||| |||| |||||||    
T  43717918 aagttctcccaaatagtctcacaaaacttatgtcaatagataagctcaaataagccaatccaaataggccctaagtg 43717842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 12497062 - 12496988
Alignment:
Q  151 ttttacaagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggc 225  Q
    ||||| |||||||| ||||||||||  |||||||||||  |  ||||||||||||| ||||||||||||| ||||    
T  12497062 ttttagaagttctctcaaacagtctcacaaaacttatgccaggagataagctcaaataaatcaatccaaataggc 12496988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 205
Target Start/End: Complemental strand, 32841015 - 32840922
Alignment:
Q  111 ataagctgtaaaaagcttatgaaaaatgtcattagtggggttttacaagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaa 205  Q
    |||||||| ||| | |||||||| |||||||| ||| |  ||| | ||||||||||||||||||| ||||||||| ||| | |||||||||||||    
T  32841015 ataagctgaaaacaacttatgaacaatgtcataagttgt-tttcataagttctcccaaacagtctcgcaaaacttgtgtgagtagataagctcaa 32840922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 35534599 - 35534529
Alignment:
Q  155 acaagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggc 225  Q
    |||||||||| ||||||||||  |||||||||||| | |||||||||||||| || ||| || ||||||||    
T  35534599 acaagttctctcaaacagtctcacaaaacttatgttagtagataagctcaaataagtcattctaaacaggc 35534529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 14280526 - 14280490
Alignment:
Q  26 ataacctatttctatagcaaaaggtaaaattaaatta 62  Q
    ||||||||||||||||||||||| |||||||||||||    
T  14280526 ataacctatttctatagcaaaagataaaattaaatta 14280490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 12010979 - 12011029
Alignment:
Q  170 cagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaa 220  Q
    |||||| | ||||| |||||||||||||||||||||| || ||||||||||    
T  12010979 cagtctcgtaaaacatatgtaattagataagctcaaataagtcaatccaaa 12011029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 36963338 - 36963272
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacag 223  Q
    |||||||||||||||||||  |||||||||||  | ||||| |||||||| ||  ||||||||||||    
T  36963338 aagttctcccaaacagtctcacaaaacttatgccagtagattagctcaaataagccaatccaaacag 36963272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 229
Target Start/End: Original strand, 43043792 - 43043826
Alignment:
Q  195 gataagctcaaacaaatcaatccaaacaggctcta 229  Q
    ||||||||||||||| |||||||||||||||||||    
T  43043792 gataagctcaaacaagtcaatccaaacaggctcta 43043826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 12224845 - 12224809
Alignment:
Q  194 agataagctcaaacaaatcaatccaaacaggctctaa 230  Q
    ||||||||||||| || ||||||||||||||||||||    
T  12224845 agataagctcaaataattcaatccaaacaggctctaa 12224809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 28763454 - 28763498
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagc 201  Q
    |||||||||||||||||||  |||||||||||| | |||||||||    
T  28763454 aagttctcccaaacagtctcacaaaacttatgttactagataagc 28763498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 35749554 - 35749506
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaa 205  Q
    |||||||| ||||||| || ||||||||||||| | |||||||||||||    
T  35749554 aagttctctcaaacagcctcgcaaaacttatgtcaatagataagctcaa 35749506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 18765370 - 18765433
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaa 220  Q
    |||||||||||||||||||  |||||||||||| | |||||||||||||| ||| |||||||||    
T  18765370 aagttctcccaaacagtctcacaaaacttatgtcaatagataagctcaaataaagcaatccaaa 18765433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 5947282 - 5947395
Alignment:
Q  111 ataagctgtaaaaagcttatgaaaaatgtcattagtggggttttacaagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaa 210  Q
    |||||||||||||||| ||||||||||||||| ||   ||||| | ||||||| |||||||||||   |||||||||   | |||||||||||||| ||     
T  5947282 ataagctgtaaaaagcatatgaaaaatgtcataag-ctggtttcaaaagttcttccaaacagtctcataaaacttataccaatagataagctcaaataag 5947380  T
Q  211 tcaatccaaacaggc 225  Q
     ||||||||||||||    
T  5947381 ccaatccaaacaggc 5947395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 36517663 - 36517736
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggctctaa 230  Q
    ||||||||||||||||||||  ||||||||||  | ||| |||||||||| |||| ||||||||||||| ||||    
T  36517663 aagttctcccaaacagtcttagaaaacttatgccagtagctaagctcaaataaatgaatccaaacaggccctaa 36517736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 4970776 - 4970708
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggc 225  Q
    |||||||||||||||||||  ||| |||||||| |  ||||||||||||| || |||||||||||||||    
T  4970776 aagttctcccaaacagtctcacaagacttatgtcacgagataagctcaaataagtcaatccaaacaggc 4970708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 18962567 - 18962499
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggc 225  Q
    ||||||||| |||||||||  |||||||||||| | |||||||| || || || |||||||||||||||    
T  18962567 aagttctccaaaacagtctaacaaaacttatgtcagtagataagatcgaataactcaatccaaacaggc 18962499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 19302544 - 19302472
Alignment:
Q  160 ttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggctctaagt 232  Q
    |||||||||| | |||  |||||||||||| | |||||||||||||| || ||||| |||||||| |||||||    
T  19302544 ttctcccaaatattctcacaaaacttatgtcagtagataagctcaaataagtcaattcaaacaggttctaagt 19302472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 34464205 - 34464141
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaac 221  Q
    |||| |||||||| ||||||| |||| |||||| | ||||||| |||||| ||||||||||||||    
T  34464205 aagtcctcccaaaaagtcttgtaaaatttatgtcaatagataaactcaaataaatcaatccaaac 34464141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 35056755 - 35056826
Alignment:
Q  151 ttttacaagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaaca 222  Q
    ||||| ||||||||||||||||| || | |||| ||||| | |||||||||||| | || ||||||||||||    
T  35056755 ttttataagttctcccaaacagttttactaaacgtatgttagtagataagctcagaaaactcaatccaaaca 35056826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 4970918 - 4970878
Alignment:
Q  21 cttacataacctatttctatagcaaaaggtaaaattaaatt 61  Q
    ||||||||| |||||||||||||||||| |||||| |||||    
T  4970918 cttacataagctatttctatagcaaaagataaaataaaatt 4970878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 9210910 - 9210970
Alignment:
Q  160 ttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaa 220  Q
    ||||||||||||||||   ||||||||| | | |||||||||||||| || ||||||||||    
T  9210910 ttctcccaaacagtctcagaaaacttatatcagtagataagctcaaataagtcaatccaaa 9210970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 43694550 - 43694494
Alignment:
Q  159 gttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaat 215  Q
    ||||||||||||||||| | ||||||||| | | ||||||| |||||| ||||||||    
T  43694550 gttctcccaaacagtctcgtaaaacttatattagtagataaactcaaataaatcaat 43694494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 230
Target Start/End: Original strand, 848030 - 848147
Alignment:
Q  111 ataagctgtaaaaagcttatgaaaaatgtcattagtggggttttacaagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaa 210  Q
    |||||||| |||||||||| |||||||||||| ||  |  ||||| ||||||| |||||||||||  |||||||||||  | |||||||||||||| ||     
T  848030 ataagctgaaaaaagcttaagaaaaatgtcataagcagt-ttttataagttcttccaaacagtctcacaaaacttatgcta-tagataagctcaaataag 848127  T
Q  211 tcaatccaaacaggctctaa 230  Q
     |||||||||||||| ||||    
T  848128 gcaatccaaacaggccctaa 848147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 10645369 - 10645304
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaaca 222  Q
    |||||||||||||||||||| |||||||||||| ||||||||| ||||||  |  |||||||||||    
T  10645369 aagttctcccaaacagtcttacaaaacttatgtcattagataacctcaaattagccaatccaaaca 10645304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 2455032 - 2455132
Alignment:
Q  111 ataagctgtaaaaagcttatgaaaaatgtcattagtggggttttacaagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaa 210  Q
    |||||||| ||| || ||||||| |||||||| |||    ||| | |||||||||||||||||||  |||||||||||| | |||||||| ||||| |||    
T  2455032 ataagctgaaaacaggttatgaacaatgtcataagt----tttcagaagttctcccaaacagtctcacaaaacttatgttagtagataagttcaaataaa 2455127  T
Q  211 tcaat 215  Q
     ||||    
T  2455128 ccaat 2455132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 35069585 - 35069528
Alignment:
Q  168 aacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggc 225  Q
    ||||||||| |||||||||||| | |||||||||||||| ||  |||| |||||||||    
T  35069585 aacagtcttacaaaacttatgtcagtagataagctcaaataagccaatacaaacaggc 35069528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 30331837 - 30331902
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaaca 222  Q
    |||||||||||||||||||  |||||||||||| | |||||||||| ||| || ||||||||||||    
T  30331837 aagttctcccaaacagtctcacaaaacttatgtcagtagataagctgaaataagtcaatccaaaca 30331902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 26143624 - 26143559
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacagg 224  Q
    |||||||||||||||||||  ||||| |||||| | |||||||||||||||||  |||||||||||||    
T  26143624 aagttctcccaaacagtct--caaaatttatgtcagtagataagctcaaacaagccaatccaaacagg 26143559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 15305760 - 15305835
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggctctaagt 232  Q
    ||||||| ||||||||| |  |||||||||||| | |||||||||||||| ||  |||||||||||||| ||||||    
T  15305760 aagttctaccaaacagtttcacaaaacttatgtcaatagataagctcaaataagccaatccaaacaggccctaagt 15305835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 28677644 - 28677577
Alignment:
Q  157 aagttctcccaaacagtctt-gcaaaacttatgtaattagataagctcaaacaaatcaatccaaacag 223  Q
    |||||||||||||||||||| |||  ||||||| || || ||||||||||| ||||||||||||||||    
T  28677644 aagttctcccaaacagtcttagcagtacttatgcaagtaaataagctcaaaaaaatcaatccaaacag 28677577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 45229552 - 45229665
Alignment:
Q  111 ataagctgtaaaaagcttatgaaaaatgtcattagtggggttttacaagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaa 210  Q
    |||||||| |||||||| |||||||||||||| || |   ||| | |||||||||||||| || | ||| ||||||||  | ||||||||||||||  ||    
T  45229552 ataagctgaaaaaagctaatgaaaaatgtcataag-gtcttttcataagttctcccaaacggtgtggcataacttatgccagtagataagctcaaatcaa 45229650  T
Q  211 tcaatccaaacaggc 225  Q
     ||||||||||||||    
T  45229651 ccaatccaaacaggc 45229665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 27317465 - 27317534
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggct 226  Q
    |||||||| ||||||||||   |||||||||||   |||||||||||||| || ||||||||||||||||    
T  27317465 aagttctctcaaacagtctcataaaacttatgtcggtagataagctcaaataagtcaatccaaacaggct 27317534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 4607009 - 4607079
Alignment:
Q  155 acaagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggc 225  Q
    ||||||||||||||| |||||  |||||||||| |   |||||||||||||| ||  ||||||||||||||    
T  4607009 acaagttctcccaaatagtctcacaaaacttatattggtagataagctcaaataagccaatccaaacaggc 4607079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 31561726 - 31561664
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaa 219  Q
    ||||| ||||||||||| || |||||||||||| | ||||||| |||||| || |||||||||    
T  31561726 aagttttcccaaacagttttacaaaacttatgttagtagataatctcaaataagtcaatccaa 31561664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 18179056 - 18179101
Alignment:
Q  178 caaaacttatgtaattagataagctcaaacaaatcaatccaaacag 223  Q
    |||||||||||| | |||||||||||||| || |||||||||||||    
T  18179056 caaaacttatgttagtagataagctcaaataagtcaatccaaacag 18179101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 39659470 - 39659421
Alignment:
Q  180 aaacttatgtaattagataagctcaaacaaatcaatccaaacaggctcta 229  Q
    |||||||||| | ||||||||||||| |||  ||||||||||||||||||    
T  39659470 aaacttatgtcagtagataagctcaagcaagccaatccaaacaggctcta 39659421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 42419879 - 42419947
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggc 225  Q
    |||||||||||||||||||   ||||||||||| |  |||||| |||||| || |||||||||| ||||    
T  42419879 aagttctcccaaacagtctcaaaaaacttatgtcagaagataaactcaaataagtcaatccaaaaaggc 42419947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 50644239 - 50644174
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaaca 222  Q
    |||||||||||||||||||  |||||| ||||| | |||||||||||||| || ||||||||||||    
T  50644239 aagttctcccaaacagtctcacaaaacatatgttagtagataagctcaaataagtcaatccaaaca 50644174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 33204378 - 33204312
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacag 223  Q
    |||||||||||||||||||  |||||||||||| | |||||||||||||| || || ||| ||||||    
T  33204378 aagttctcccaaacagtctcacaaaacttatgtcagtagataagctcaaataagtcgatctaaacag 33204312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 2295182 - 2295250
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggc 225  Q
    |||||||||||||||||||  |||||||||||  | |||||||||||||| ||  |||| |||||||||    
T  2295182 aagttctcccaaacagtctcacaaaacttatgccagtagataagctcaaataagccaattcaaacaggc 2295250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 15784410 - 15784465
Alignment:
Q  164 cccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaa 219  Q
    ||||||||||||| |||||||||||| | |||||||||||||| || || ||||||    
T  15784410 cccaaacagtcttacaaaacttatgttagtagataagctcaaataagtcgatccaa 15784465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 29904831 - 29904886
Alignment:
Q  151 ttttacaagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaa 206  Q
    ||||| |||||||| ||||||||||  ||||||||||| || ||||||||||||||    
T  29904831 ttttataagttctctcaaacagtctcacaaaacttatgcaagtagataagctcaaa 29904886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 3233999 - 3233933
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacag 223  Q
    |||||||||| ||||||||  ||||||||| |  | |||||||||||||| || |||||||||||||    
T  3233999 aagttctccctaacagtctcacaaaacttacggcactagataagctcaaataagtcaatccaaacag 3233933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 36872817 - 36872887
Alignment:
Q  160 ttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggctctaa 230  Q
    |||||| ||||||||| |||||||||||||  |||| |||||| ||| ||  |||||||||||||| ||||    
T  36872817 ttctccaaaacagtctcgcaaaacttatgttgttagttaagcttaaataagccaatccaaacaggccctaa 36872887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 37473444 - 37473503
Alignment:
Q  111 ataagctgtaaaaagcttatgaaaaatgtcattagtggggttttacaagttctcccaaaca 171  Q
    |||||||| ||||||||||||||||||||||| |||  | ||| | |||||||||||||||    
T  37473444 ataagctggaaaaagcttatgaaaaatgtcataagt-tgttttcaaaagttctcccaaaca 37473503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 3932705 - 3932594
Alignment:
Q  111 ataagctgtaaaaagcttatgaaaaatgtcattagtggggttttacaagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaa 210  Q
    ||||||||||||||||||||||||| | |||| ||  |  |||| |||||| || ||||||||||  |||| |||||||  |||||||||||||||  |     
T  3932705 ataagctgtaaaaagcttatgaaaattatcataagctgt-ttttgcaagttttctcaaacagtctcacaaagcttatgttgttagataagctcaaattag 3932607  T
Q  211 tcaatccaaacag 223  Q
    |||||||||||||    
T  3932606 tcaatccaaacag 3932594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 34736511 - 34736446
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaaca 222  Q
    |||||||||||||| ||||  |||||||||||| |  ||||||||||||| || ||||||||||||    
T  34736511 aagttctcccaaactgtctcacaaaacttatgtcaccagataagctcaaataagtcaatccaaaca 34736446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 15246919 - 15246987
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggc 225  Q
    ||||||||||||||| |||   ||||||||||| | |||||||||||||| |||  |||||||||||||    
T  15246919 aagttctcccaaacattctaataaaacttatgtcagtagataagctcaaataaacaaatccaaacaggc 15246987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 9107177 - 9107240
Alignment:
Q  158 agttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaac 221  Q
    |||||||||||||| |||  |||||||||||| | ||||||| |||||| || |||||||||||    
T  9107177 agttctcccaaacattctcacaaaacttatgtcactagataaactcaaataagtcaatccaaac 9107240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 6521118 - 6521232
Alignment:
Q  111 ataagctgtaaaaagcttatgaaaaatgtcattagtggggttttacaagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaa 210  Q
    |||||| | ||||||||| |||||| |||||| |||  | ||| | ||||||||||||||| |||  |||||| ||||| | ||| | ||||| || ||     
T  6521118 ataagccgaaaaaagcttgtgaaaattgtcataagtccgttttcataagttctcccaaacaatctcacaaaacatatgtcagtagttcagctctaataag 6521217  T
Q  211 tcaatccaaacaggc 225  Q
    |||||||||||||||    
T  6521218 tcaatccaaacaggc 6521232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 34669758 - 34669724
Alignment:
Q  112 taagctgtaaaaagcttatgaaaaatgtcattagt 146  Q
    ||||||| |||||||||||||||||||||||||||    
T  34669758 taagctgaaaaaagcttatgaaaaatgtcattagt 34669724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 12425659 - 12425708
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaa 206  Q
    |||||||||||||||||||  |||||||||||  | ||||||||||||||    
T  12425659 aagttctcccaaacagtctcacaaaacttatgacagtagataagctcaaa 12425708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 15015929 - 15015978
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaa 206  Q
    |||||||||||||||||||  |||| ||||||| | ||||||||||||||    
T  15015929 aagttctcccaaacagtctcacaaagcttatgtcagtagataagctcaaa 15015978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 39594893 - 39594958
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaaca 222  Q
    ||||| ||||||||| |||  ||||||||||||   |||||||||||||| || ||||||||||||    
T  39594893 aagttgtcccaaacaatctaacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 39594958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 40426858 - 40426919
Alignment:
Q  164 cccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggc 225  Q
    ||||||||||||  ||||| |||||| |||||||||||||||| || |||| | ||||||||    
T  40426858 cccaaacagtctcacaaaatttatgtcattagataagctcaaataagtcaaccaaaacaggc 40426919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 10639898 - 10639934
Alignment:
Q  26 ataacctatttctatagcaaaaggtaaaattaaatta 62  Q
    |||| |||||||||||||||||| |||||||||||||    
T  10639898 ataagctatttctatagcaaaagataaaattaaatta 10639934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 13126605 - 13126494
Alignment:
Q  111 ataagctgtaaaaagcttatgaaaaatgtcattagtggggttttacaagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaa 210  Q
    |||||||| ||||||||||||| ||||||||| ||  |  ||||| ||||||| |||||||||||  |||||||||||| | ||| |||||| ||| ||     
T  13126605 ataagctgaaaaaagcttatgataaatgtcataagctgt-ttttataagttcttccaaacagtctcacaaaacttatgttagtaggtaagctaaaataag 13126507  T
Q  211 tcaatccaaacag 223  Q
     ||||||||||||    
T  13126506 ccaatccaaacag 13126494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 21731640 - 21731572
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggc 225  Q
    ||||||||||||||| |||  |||||||||||| | |||||| ||||||| ||| ||||||||||||||    
T  21731640 aagttctcccaaacaatctcacaaaacttatgtcagtagatatgctcaaataaaccaatccaaacaggc 21731572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 29388700 - 29388768
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggc 225  Q
    ||||||||||||||| |||| |||||||||||| | |||||||| ||||| || |||| ||||||||||    
T  29388700 aagttctcccaaacaatcttacaaaacttatgttagtagataaggtcaaataagtcaacccaaacaggc 29388768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 225
Target Start/End: Complemental strand, 25904252 - 25904139
Alignment:
Q  111 ataagctgtaaaaagcttatgaaaaatgtcattagtggggttttacaagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaa 210  Q
    |||||||| ||||||||||||||||||| ||| ||  |  ||| | ||| |||||||||||||||  ||||| |||||| ||| |||||||||||| ||     
T  25904252 ataagctgaaaaaagcttatgaaaaatggcataagctgt-tttcataagctctcccaaacagtctcacaaaatttatgtcattggataagctcaaataag 25904154  T
Q  211 tcaatccaaacaggc 225  Q
    |||| | ||||||||    
T  25904153 tcaaccaaaacaggc 25904139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 8705021 - 8705093
Alignment:
Q  151 ttttacaagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacag 223  Q
    ||||| |||||||||||| ||||||  |||||||||||| | ||||||||||||||  |  ||||||||||||    
T  8705021 ttttataagttctcccaatcagtctcacaaaacttatgtcaatagataagctcaaatgagccaatccaaacag 8705093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 15173283 - 15173223
Alignment:
Q  161 tctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaac 221  Q
    |||||||||||||||  |||||||||||| | |||||||| ||||| || |||||||||||    
T  15173283 tctcccaaacagtctcacaaaacttatgtcagtagataagttcaaataagtcaatccaaac 15173223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 54426129 - 54426197
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggc 225  Q
    |||||||||||| ||||||  |||||||||||  | |||||||||||||| ||  ||||||||||||||    
T  54426129 aagttctcccaagcagtctcacaaaacttatgccagtagataagctcaaataagccaatccaaacaggc 54426197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 27043811 - 27043748
Alignment:
Q  160 ttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacag 223  Q
    |||| ||||||||| |  |||||||||||| | |||||||||||||| || |||||||||||||    
T  27043811 ttcttccaaacagtttcacaaaacttatgtcagtagataagctcaaataagtcaatccaaacag 27043748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 40174643 - 40174702
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatc 216  Q
    ||||| |||||||||||||  |||||||||||| | ||||||| |||||| |||||||||    
T  40174643 aagttatcccaaacagtctcacaaaacttatgttagtagataaactcaaataaatcaatc 40174702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 53294097 - 53294030
Alignment:
Q  158 agttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggc 225  Q
    |||| |||||||||||||| ||||||| |||| | ||||||||| ||||  | |||||||||||||||    
T  53294097 agttttcccaaacagtcttacaaaactcatgtcagtagataagcacaaattagtcaatccaaacaggc 53294030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 49940151 - 49940085
Alignment:
Q  157 aagttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacag 223  Q
    |||||||| ||||||||||  |||||||||||| |  || |||||||||| || |||||||||||||    
T  49940151 aagttctctcaaacagtctcacaaaacttatgttagcaggtaagctcaaataagtcaatccaaacag 49940085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 39691130 - 39691065
Alignment:
Q  160 ttctcccaaacagtcttgcaaaacttatgtaattagataagctcaaacaaatcaatccaaacaggc 225  Q
    ||||| ||||||||||  |||||||||||  | |||||||||||||| || ||||| |||||||||    
T  39691130 ttctctcaaacagtctcacaaaacttatgctagtagataagctcaaataagtcaattcaaacaggc 39691065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University