View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_25 (Length: 383)
Name: NF9779_low_25
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 37141327 - 37140954
Alignment:
| Q |
1 |
ccacgtagatatccgtctgaacccgccaattttgacagggaaaa-acattccaatgcacaaatttgggtacaacgtagaatcataatagctagtattacc |
99 |
Q |
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| T |
37141327 |
ccacgtagatatccgtttgaacccgccaattttgacagggaaaacacattccattgcacaaatttggattcaacgtagaatcagaatagcttgtattacc |
37141228 |
T |
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| Q |
100 |
tttatcccagcaaacgtctttctagcttcaaaattattcttattttaaatcctggtgtgaactatgtcggtccttaatcgaataaaaccgacgttagtct |
199 |
Q |
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| T |
37141227 |
tttatcccagcaaacatctttctagcatcgcaattattcctattttaaatcctagtctgaacaatgtcggtccttaatcgaattaaaccgacgttagtct |
37141128 |
T |
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| Q |
200 |
aaatggaacaaaagggtttgggatgacatgacaacaaattgttctattattgtccataaaagcaattttttcactttcagcttcacctcttgctctaact |
299 |
Q |
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| T |
37141127 |
agatggaacaaaagggtttgggatgacatgacaacaaattgttgtattattgtccataaaagcaattttttcactttcagcttcacctcttgctctaact |
37141028 |
T |
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| Q |
300 |
acctttcctacagaataagttacacccaattgtaattatttacttgcatactttttaatcaatgtgaacctatg |
373 |
Q |
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| T |
37141027 |
accattcctacacaataagttacactcatttgtaacaatctacttgcatattttttaatcaatgtgaacctatg |
37140954 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 373
Target Start/End: Complemental strand, 44586459 - 44586378
Alignment:
| Q |
292 |
ctctaactacctttcctacagaataagttacacccaattgtaattatttacttgcatactttttaatcaatgtgaacctatg |
373 |
Q |
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| T |
44586459 |
ctctaactacctctcctacacaataagttacgctcgattataactatttacttgcgtactttgtaatcaatgtcaatctatg |
44586378 |
T |
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