View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_26 (Length: 382)
Name: NF9779_low_26
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 377
Target Start/End: Complemental strand, 47431209 - 47430832
Alignment:
| Q |
11 |
cagagatgcataagttttatctggtgctcacaaaataataagagaaattcatcgcattcttacaaattggcttacattgcatataaaagtttgtttgctt |
110 |
Q |
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| T |
47431209 |
cagagatgcataagttttatctggtgctcacaaaataa---gagaaattcatcgcattcttacaaattggcttacattgcatataaaagtttgtttgctt |
47431113 |
T |
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| Q |
111 |
atatttaaaactgaagtagtac------------ctgtatata------gaaaacaataaaatatagagaagttcatcattttttagactaagcaattaa |
192 |
Q |
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| T |
47431112 |
atatttaaaactgaagtagtacggtaagatgaaactgtatatatatatagaaaacaataaaatatagagaagttcatcattttttagactaagcaat--- |
47431016 |
T |
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| Q |
193 |
tgtgtgaagccatctcagattgtattagtttttctcctgtagcatcaccacgctgatagacacctaccacataacgatcatatgcatgcttcttggcctg |
292 |
Q |
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| T |
47431015 |
-gtgtgaagccatctcagattgtattagtttttctcctgtagcatcaccacgctgatagacacctaccacataacgatcatatgcatgcttcttggcctg |
47430917 |
T |
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| Q |
293 |
ggttgagctcagtgtagaaagaacctaagagataaatgaaagaaatagatgacaaagtaatcaaacggatgtttggtaacatcgt |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
47430916 |
ggttgagctcagtgtagaaagaacctaagagataaatgaaagaaatagatgacaaagtaatcaaatggatgtttggtaagatcgt |
47430832 |
T |
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