View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_28 (Length: 377)
Name: NF9779_low_28
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 263
Target Start/End: Original strand, 47328652 - 47328905
Alignment:
| Q |
14 |
caaagggaatggagtaatagtatctcaaaattggcttgtatcttttccatcgacaaaagctacatgatctctatgatcgcaaagtttggtgtgatgttac |
113 |
Q |
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| T |
47328652 |
caaagggaatggagtaatagtatctcaaaattggcttgtatcttttccatcgacaaaagctatatgatctctatgatcgcaaagtttggtgtgatgttac |
47328751 |
T |
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| Q |
114 |
tcttatggatgtttgccacc--nnnnnnnggaagaccttggcaatatgatctccatgccttat--gacagtcatgccaatactcacatttaagtgaaaga |
209 |
Q |
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| T |
47328752 |
tcttatggatgtttgccacctttttttttgtaagaccttggcaatatgatctccatgccttatacgacagtcatgcgaatactcacatttaagtgaaaga |
47328851 |
T |
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| Q |
210 |
tcaagttaaaatcgagttggtacctctacaacccggtgaactcaatgaaggaag |
263 |
Q |
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| T |
47328852 |
tcaagttaaaatcgagttggtacctctacaacccggtgaactcaatgaaggaag |
47328905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 47328935 - 47329011
Alignment:
| Q |
285 |
caagtcattagaacttatagtcaacaaagttatttatgccatgtgaagctactgggaaaatgttggtatggattttg |
361 |
Q |
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| T |
47328935 |
caagtcactagaacttatagtcaacaaagttatatatgccatgtgaagctactgggaaaatgttggtatggattttg |
47329011 |
T |
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