View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_29 (Length: 365)
Name: NF9779_low_29
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 164 - 349
Target Start/End: Original strand, 22756928 - 22757111
Alignment:
| Q |
164 |
ttaagatgcttggaatttggatatatgcttgattcta-ttttttgttttggttaaggaatttgnnnnnnnnnngttcttactttataagtttttgtggat |
262 |
Q |
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| T |
22756928 |
ttaagatgctgggaatttggatatatgcttgattctaattttttgttttggttaaggaatttgttttttt---gttcttactttataagtttttgtggat |
22757024 |
T |
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| Q |
263 |
atgtagttagaagtatcaacaaatcaggaactaaatcagaggattccattgttcaaacttcccaacaagatcctttgtcgtgatgtc |
349 |
Q |
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| T |
22757025 |
gtgtagttagaagtatcaacaaatcaggaactaaatcagaggattccattgttcaaacttcccaacaagatcctttgtcgtgttgtc |
22757111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 22756778 - 22756863
Alignment:
| Q |
20 |
tatggaaggcttgtgctggtcctcatgttgaagttcctcgtgctggacaaagagttttctattttcctcaaggacacatggaacaa |
105 |
Q |
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| T |
22756778 |
tatggaaggcttgtgctggtcctcatgttgaagttcctcgtgctggacaaagagttttctattttcctcaaggacacatggaacaa |
22756863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 7077642 - 7077583
Alignment:
| Q |
46 |
gttgaagttcctcgtgctggacaaagagttttctattttcctcaaggacacatggaacaa |
105 |
Q |
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| T |
7077642 |
gttgatgttccttgtgttggtcaaagtgttttctatttcccacaaggacacatggaacaa |
7077583 |
T |
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