View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_3 (Length: 554)
Name: NF9779_low_3
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 13 - 544
Target Start/End: Complemental strand, 43691658 - 43691131
Alignment:
| Q |
13 |
taggttgaaatttttgaatatttgttattcaaagtcatgtattacctgaacattatttctgccattaaaaggtggataaccatttagaagctcaaaaagc |
112 |
Q |
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| T |
43691658 |
taggttgaaatttttgaatatttgttattcaaagtcatgtattacctgaacattatttctgccattaaaaggtggataaccatttagaagctcaaaaagc |
43691559 |
T |
|
| Q |
113 |
atggccccaacactccacatgtctgcctgtaattatcaagtaaatatcagtaaaccaaggtaattaat-ttaaaagtgtcaatgagtttttgccagcaac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43691558 |
atggccccaacactccacatgtctgcctgtaattatcaagtaaatatcagtaaaccaaggtaattaatattaaaagtgtcaatgagtttttgccagcaac |
43691459 |
T |
|
| Q |
212 |
ctaatatgtctacgaaaatatggaatggaaacaaacggtgacaagtctgagattcacgagaatgtagcaaaatgattatgatgttttattgttgtgtaca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43691458 |
ctaatatgtctacgaaaatatggaatggaaacaaacggtgacaagtctgagattcacgagaatgtagcaaaatgattatgatgttttattgttgtgcaca |
43691359 |
T |
|
| Q |
312 |
cgaagtgaaaaatcagaacatttgcaatgaaatcaagcatgtttagtttctgagcgcaagagatgtccttttactcgcttgtttatgagtccataccaca |
411 |
Q |
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| T |
43691358 |
cgaagtgaaaaatcagaacatttgcaatgaaatcaagcatgtttagtttctgagcgcaagagatgtccttttac-----tgtttgtgagtccataccaca |
43691264 |
T |
|
| Q |
412 |
acttagtatatacaaaaagagaacaaaaccatctaatgttgccacttgaacttattgaatatacaaaacgcaacagaaagcaatagtaaggagaattgat |
511 |
Q |
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| T |
43691263 |
acttagtatatacaaaaagagaacaaaaccatcttatgttgccacttgaacttattgaatatacaaaacgcaacagaaagcaatagtaaggagaattgat |
43691164 |
T |
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| Q |
512 |
accttgtgatcatatctctgaaactgaagaact |
544 |
Q |
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| T |
43691163 |
accttgtgatcatatctctggaactgaagaact |
43691131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 544
Target Start/End: Complemental strand, 43681329 - 43680778
Alignment:
| Q |
13 |
taggttgaaatttttgaatatttgttattcaaagtcatgtattacctgaacattatttctgccattaaaaggtggataaccatttagaagctcaaaaagc |
112 |
Q |
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||||||||| || ||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
43681329 |
taggttgaatttgttgaatatttgttattcgaagttatgtattacctgaacattatttctgccgttaaaaggtggataaccatttagaagctcaaaatgc |
43681230 |
T |
|
| Q |
113 |
atggccccaacactccacatgtctgcctgtaa---ttatcaagtaaatatcagtaaaccaaggtaattaat-ttaaaagtgtcaatgagtttttgccagc |
208 |
Q |
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||||||||| |||||||||||||||||||||| ||||||| |||||| ||||||||||| |||||||| || ||||||| ||||| |||||| |||| |
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| T |
43681229 |
atggccccagcactccacatgtctgcctgtaattattatcaaacaaatatgagtaaaccaagttaattaatgttgaaagtgttaatgaatttttggcagc |
43681130 |
T |
|
| Q |
209 |
aacctaatatgtct-----acgaaaatatggaatggaaacaaacggtgacaagtctgagattcacgagaatgt-agcaaaatgattatgatgttttattg |
302 |
Q |
| |
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||||||||||| || | |||||| |||||| |||||| ||||| |||||||||||| ||||||||| || |||||||||||||||||||||||||| |
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| T |
43681129 |
aacctaatatgactccgaaaagaaaatctggaatagaaacagacggtaacaagtctgagactcacgagaacgtgagcaaaatgattatgatgttttattg |
43681030 |
T |
|
| Q |
303 |
ttgtgtacacgaagtgaaaaatcagaacatttgcaatgaaatcaagcatgttt-----agtttctgagcgcaagagatgtccttttactcgcttgtttat |
397 |
Q |
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||||| ||||||| || ||||||||| |||| ||||||||| || ||| ||| | | | | ||||||| |||||||||||||| |||||||| | |
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| T |
43681029 |
ttgtgcacacgaattggaaaatcagaggattttcaatgaaatgaaacatttttacccaattcttttagcgcaaacgatgtccttttacttgcttgtttgt |
43680930 |
T |
|
| Q |
398 |
gagtccataccacaacttagtatatacaa-----aaagagaacaaaaccatctaatgttgccacttgaacttattgaata-tacaaaacgcaacagaaag |
491 |
Q |
| |
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||||||||| ||||| ||| |||||| || |||||| |||||||||||| ||| |||||||||||||||||||||| ||||||| |||||||||| |
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| T |
43680929 |
gagtccatatcacaatttattatataaaaactttaaagagcacaaaaccatcttatg-tgccacttgaacttattgaatattacaaaatacaacagaaag |
43680831 |
T |
|
| Q |
492 |
caatagtaaggagaattgataccttgtgatcatatctctgaaactgaagaact |
544 |
Q |
| |
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|||||||||| |||||||| |||||||||||||||||||| ||||| |||||| |
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| T |
43680830 |
caatagtaagaagaattgacaccttgtgatcatatctctggaactgtagaact |
43680778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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