View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_33 (Length: 345)
Name: NF9779_low_33
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 26 - 335
Target Start/End: Original strand, 16917314 - 16917623
Alignment:
| Q |
26 |
gagacttcaaatacattattgtcgcaaactcattttaccagctaatatgaacatgttaacttcccttcgtgaagtgagtatcatgggtgcggataaaagg |
125 |
Q |
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| T |
16917314 |
gagacttcaaatacattattgtcccaaactcattttaccagctaatatgaacatgttaacttcccttcgtaaagtgactatcatgggtgcggataaaagg |
16917413 |
T |
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| Q |
126 |
cgcaggttatataacggcttagaacacattccgtcgctgcaaaatttgtctctgacagattttccttctcttagatctttgccagactggttgggaaaca |
225 |
Q |
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| T |
16917414 |
cgcaggttatataacggcttagaacacattccctcgctggaaaatttgtctctgacagattttccttttcttagatctttgccagactggttgggaaaca |
16917513 |
T |
|
| Q |
226 |
cgcctactcttcaggaattagaaattagtaagtttcctatcttaaccgagttaccagacaactttgaccaacacaaaaacttgcagaaactaagtattga |
325 |
Q |
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| T |
16917514 |
cgctatctcttcagaaattagaaattagtaagtttcctgtgttaacctcactaccagacaactttgagcaactcgaaaacttgcagaaactaagtattga |
16917613 |
T |
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| Q |
326 |
tagatgtcct |
335 |
Q |
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|||||||||| |
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| T |
16917614 |
tagatgtcct |
16917623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 26 - 341
Target Start/End: Original strand, 16912128 - 16912443
Alignment:
| Q |
26 |
gagacttcaaatacattattgtcgcaaactcattttaccagctaatatgaacatgttaacttcccttcgtgaagtgagtatcatgggtgcggataaaagg |
125 |
Q |
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||||||| |||||| ||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |
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| T |
16912128 |
gagacttataatacactattgtcccgaactcattttaccagctaatatgaacatgttaaattcccttcgtgaagtgagtatcatgggtggggatagaagg |
16912227 |
T |
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| Q |
126 |
cgcaggttatataacggcttagaacacattccgtcgctgcaaaatttgtctctgacagattttccttctcttagatctttgccagactggttgggaaaca |
225 |
Q |
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| T |
16912228 |
cgcgggatatataacggcttagaagacattcccttgctgcaaaatttgtctctgagagattttccttctcttagatctttgccagactggttgggagaca |
16912327 |
T |
|
| Q |
226 |
cgcctactcttcaggaattagaaattagtaagtttcctatcttaaccgagttaccagacaactttgaccaacacaaaaacttgcagaaactaagtattga |
325 |
Q |
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||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | ||||||||||||||||| ||||||| |
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| T |
16912328 |
cgctatctcttcaggaattagaaattagtaagtttcctaagttaacctcgttaccagacaactttgaccaactcgaaaacttgcagaaactatgtattga |
16912427 |
T |
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| Q |
326 |
tagatgtcctatgctt |
341 |
Q |
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||||||||||| |||| |
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| T |
16912428 |
tagatgtcctaggctt |
16912443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 16836779 - 16836728
Alignment:
| Q |
58 |
ttttaccagctaatatgaacatgttaacttcccttcgtgaagtgagtatcat |
109 |
Q |
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| T |
16836779 |
ttttaccagctaatatgaacatgctaagttcccttcgtgaagtgagaatcat |
16836728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 16841890 - 16841845
Alignment:
| Q |
58 |
ttttaccagctaatatgaacatgttaacttcccttcgtgaagtgag |
103 |
Q |
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| T |
16841890 |
ttttaccagctaatatgaacatgctaagttcccttcgtgaagtgag |
16841845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 13376036 - 13375982
Alignment:
| Q |
166 |
aaaatttgtctctgacagattttccttctcttagatctttgccagactggttggg |
220 |
Q |
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||||||||||||| || ||||||||||||| | ||| ||||||||||||||||| |
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| T |
13376036 |
aaaatttgtctctaactaattttccttctctaacatccttgccagactggttggg |
13375982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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