View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9779_low_34 (Length: 341)

Name: NF9779_low_34
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9779_low_34
NF9779_low_34
[»] chr1 (2 HSPs)
chr1 (1-322)||(38831690-38832015)
chr1 (221-262)||(16316263-16316304)
[»] chr2 (1 HSPs)
chr2 (177-260)||(42784050-42784135)
[»] chr7 (2 HSPs)
chr7 (189-242)||(12139816-12139869)
chr7 (222-255)||(40059020-40059053)
[»] chr4 (2 HSPs)
chr4 (191-264)||(5580310-5580385)
chr4 (158-256)||(48632100-48632198)
[»] chr3 (2 HSPs)
chr3 (227-264)||(32072756-32072793)
chr3 (223-255)||(46751084-46751116)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 38831690 - 38832015
Alignment:
Q  1 cagaaccgcacgattgaaattttttcatttctgagtcaattctgtcgttagtctctaatataccgagttcagaacttcagataagccacctagaagaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38831690 cagaaccgcacgattgaaattttttcatttctgagtcaattctgtcgttagtctctaatataccgagttcagaacttcagataagccacctagaagaaaa 38831789  T
Q  101 -tgatccatttttagttgattattaaaataaagatattgctaacaagtgtcacatgagcattgtataaagattcctgtaaaataaattttctcttaaaaa 199  Q
     ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38831790 atgatccatttttagttgattattaaaataaagatattgctaacgagtgtcacatgagcattgtataaaaattcctgtaaaataaattttctcttaaaaa 38831889  T
Q  200 tacaagttgttac--ttgtctaagtaataattacacaactttttaacataaatttactacttttagtttactctaaccaatatcatgaaggcactcgtt- 296  Q
    ||||| |||||||  || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||  | ||||||||||     
T  38831890 tacaaattgttacttttatctaagtaataattacacaattttttaacataaatttactacttttagtttactctaaccaatgtcaccagggcactcgtta 38831989  T
Q  297 aatattgttcttgaaataaaccatct 322  Q
    ||||||||||||||||||||||||||    
T  38831990 aatattgttcttgaaataaaccatct 38832015  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 16316263 - 16316304
Alignment:
Q  221 gtaataattacacaactttttaacataaatttactactttta 262  Q
    |||||| |||||||||||||||| ||||| ||||||||||||    
T  16316263 gtaatagttacacaactttttaatataaacttactactttta 16316304  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 42784050 - 42784135
Alignment:
Q  177 taaaataaattttctcttaaaaatacaagttgttactt--gtctaagtaataattacacaactttttaacataaatttactacttt 260  Q
    ||||| ||||||| ||||  |||||||| ||||| |||  ||| | | ||||||||||||||||||||| ||||||||||||||||    
T  42784050 taaaagaaattttatcttggaaatacaaattgtttctttagtcaatgcaataattacacaactttttaatataaatttactacttt 42784135  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 12139816 - 12139869
Alignment:
Q  189 tctcttaaaaatacaagttgttacttgtctaagtaataattacacaacttttta 242  Q
    |||||| |||||||||||| ||| |||||| || ||||||||||||||||||||    
T  12139816 tctcttgaaaatacaagtttttatttgtctcagcaataattacacaacttttta 12139869  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 255
Target Start/End: Complemental strand, 40059053 - 40059020
Alignment:
Q  222 taataattacacaactttttaacataaatttact 255  Q
    |||||||||||||||||||||| |||||||||||    
T  40059053 taataattacacaactttttaatataaatttact 40059020  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 264
Target Start/End: Complemental strand, 5580385 - 5580310
Alignment:
Q  191 tcttaaaaatacaagttgttactt--gtctaagtaataattacacaactttttaacataaatttactacttttagt 264  Q
    ||||| |||||||| ||||| |||  ||| | ||||||||||||||||||||||| ||||| || |||||||||||    
T  5580385 tcttagaaatacaaattgttcctttagtcaatgtaataattacacaactttttaatataaactttctacttttagt 5580310  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 256
Target Start/End: Original strand, 48632100 - 48632198
Alignment:
Q  158 cattgtataaagattcctgtaaaataaattttctcttaaaaatacaagttgttacttgtctaagtaataattacacaactttttaacataaatttacta 256  Q
    |||| |||||||||| |  ||||  ||||||| |||||||||||||  ||||||||| | | | |||||| |||||||||||||||  |||| ||||||    
T  48632100 cattatataaagattgcattaaagaaaattttgtcttaaaaatacatattgttacttttatcaataataaatacacaactttttaatttaaacttacta 48632198  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 32072793 - 32072756
Alignment:
Q  227 attacacaactttttaacataaatttactacttttagt 264  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  32072793 attatacaactttttaatataaatttactacttttagt 32072756  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 46751084 - 46751116
Alignment:
Q  223 aataattacacaactttttaacataaatttact 255  Q
    ||||||||||||||||||| |||||||||||||    
T  46751084 aataattacacaacttttttacataaatttact 46751116  T

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