View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_35 (Length: 340)
Name: NF9779_low_35
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 6 - 322
Target Start/End: Complemental strand, 47709287 - 47708970
Alignment:
| Q |
6 |
gtttggtgttgcttttccacttaacatagccttaggcaattgaagtaacttacatctttctttctaactttaattttgttgtatatcatttctctaattg |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47709287 |
gtttggtgttgcttttccacttaacatagccttaggcaattgaagtaacttacatctttctttctaactttagttttgttgtatatcatttctctaattg |
47709188 |
T |
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| Q |
106 |
tcgcaattttctttaaaa-ctatcagctctaaaatcaaatctatatccaagtaattattatctatttaatttaatttgtagtagtatgagtatgaaccaa |
204 |
Q |
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| T |
47709187 |
ttacaattttctttaaaagctatcagctctaaaatcaaatctatatccaagtaatcattatctattttatataatttgtagtagtatgagtatgaaccaa |
47709088 |
T |
|
| Q |
205 |
gcaatggtcatacactcgtacttcattctctagaagaagaaaaataacaatatagttacaatatgctaggctagctaatgataataaacaagttttttgt |
304 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47709087 |
gcaatggtcatacactcatacttcattctctagaagaaaaaaaataacaatatagttacaatatgctaggctggctaatgataataaacaagttttttgt |
47708988 |
T |
|
| Q |
305 |
ttgctatttggcctaaag |
322 |
Q |
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||||| |||||||||||| |
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| T |
47708987 |
ttgctttttggcctaaag |
47708970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 6 - 322
Target Start/End: Complemental strand, 47720943 - 47720626
Alignment:
| Q |
6 |
gtttggtgttgcttttccacttaacatagccttaggcaattgaagtaacttacatctttctttctaactttaattttgttgtatatcatttctctaattg |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47720943 |
gtttggtgttgcttttccacttaacatagccttaggcaattgaagtaacttacatctttctttctaactttagttttgttgtatatcatttctctaattg |
47720844 |
T |
|
| Q |
106 |
tcgcaattttctttaaaa-ctatcagctctaaaatcaaatctatatccaagtaattattatctatttaatttaatttgtagtagtatgagtatgaaccaa |
204 |
Q |
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| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
47720843 |
ttacaattttctttaaaagctatcagctctaaaatcaaatctatatccaagtaatcattatctattttatataatttgtagtagtatgagtatgaaccaa |
47720744 |
T |
|
| Q |
205 |
gcaatggtcatacactcgtacttcattctctagaagaagaaaaataacaatatagttacaatatgctaggctagctaatgataataaacaagttttttgt |
304 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47720743 |
gcaatggtcatacactcatacttcattctctagaagaaaaaaaataacaatatagttacaatatgctaggctggctaatgataataaacaagttttttgt |
47720644 |
T |
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| Q |
305 |
ttgctatttggcctaaag |
322 |
Q |
| |
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||||| |||||||||||| |
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| T |
47720643 |
ttgctttttggcctaaag |
47720626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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