View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_37 (Length: 331)
Name: NF9779_low_37
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_37 |
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| [»] scaffold0013 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 13051946 - 13052248
Alignment:
| Q |
19 |
ggatggaggtcaagacaatgcttgtgcaagagcaagaaactggattcgtgatcacggtggtgtaacacatataccttcatggggaaaaacttggctttcg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13051946 |
ggatggaggtcaagacaatgcttgtgcaagagcaagaaactggattcgtgatcacggtggtgtaacgcatataccttcatggggaaaaacttggctttcg |
13052045 |
T |
|
| Q |
119 |
gtataattttttacatttagggttaggattttatctaatataannnnnnnnatgaaacatgaaatccatgaagaaatgagagaaaatcttcaaatttgta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13052046 |
gtataattttttacatttagggttaggattctatctaatataattttttttatgaaacatgaaatccatgaagaaatgagagaaaatcttcaaatttgta |
13052145 |
T |
|
| Q |
219 |
tcgataaaatgagtaaaggttattctttatctgtagatacttggtgtatttgattggtctggatgcaacccgatgccccctgagttttggatcctacctt |
318 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13052146 |
tcgataaaatgagtaaaagctattctttatctgtagatacttggtgtatttgattggtctggatgcaacccgatgccccctgagttttggatcctacctt |
13052245 |
T |
|
| Q |
319 |
cat |
321 |
Q |
| |
|
||| |
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|
| T |
13052246 |
cat |
13052248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 162227 - 162328
Alignment:
| Q |
20 |
gatggaggtcaagacaatgcttgtgcaagagcaagaaactggattcgtgatcacggtggtgtaacacatataccttcatggggaaaaacttggctttcgg |
119 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
162227 |
gatggaggtcaagacaatgcttgtgctagagccagaaactggattcgtgatcacggtggtgtaacacgtataccttcatgggggaaaacttggctttcgg |
162326 |
T |
|
| Q |
120 |
ta |
121 |
Q |
| |
|
|| |
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|
| T |
162327 |
ta |
162328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 103047 - 103148
Alignment:
| Q |
20 |
gatggaggtcaagacaatgcttgtgcaagagcaagaaactggattcgtgatcacggtggtgtaacacatataccttcatggggaaaaacttggctttcgg |
119 |
Q |
| |
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||||| |||||||||||||||||||| ||||| |||||||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
103047 |
gatggcggtcaagacaatgcttgtgctagagccagaaactggattcgggcacacggtggtgtcacatatataccttcatggggaaaaacttggctttcgg |
103146 |
T |
|
| Q |
120 |
ta |
121 |
Q |
| |
|
|| |
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|
| T |
103147 |
ta |
103148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 252 - 321
Target Start/End: Original strand, 162498 - 162567
Alignment:
| Q |
252 |
tagatacttggtgtatttgattggtctggatgcaacccgatgccccctgagttttggatcctaccttcat |
321 |
Q |
| |
|
|||||||||||||||| ||||||||| ||| ||||||| ||||||||||||||||||||||| ||||||| |
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| T |
162498 |
tagatacttggtgtatatgattggtcgggaagcaacccaatgccccctgagttttggatccttccttcat |
162567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 252 - 321
Target Start/End: Original strand, 103227 - 103296
Alignment:
| Q |
252 |
tagatacttggtgtatttgattggtctggatgcaacccgatgccccctgagttttggatcctaccttcat |
321 |
Q |
| |
|
|||||||||||| | |||||||||| ||| ||||||| ||||||||||||||||||||||| ||||||| |
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| T |
103227 |
tagatacttggtctctttgattggttgggaagcaacccaatgccccctgagttttggatccttccttcat |
103296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 12138215 - 12138114
Alignment:
| Q |
21 |
atggaggtcaagacaatgcttgtgcaagagcaagaaactggattcgtgatcacggtggtgtaacacatataccttcatggggaaaaacttggctttcggt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |
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|
| T |
12138215 |
atggaggtcaagacaatgcttgtgcaagagcaagaaagtggattcatgatcatggtggtgtgacacagataccttcatggggaaaaacttggctttcggt |
12138116 |
T |
|
| Q |
121 |
at |
122 |
Q |
| |
|
|| |
|
|
| T |
12138115 |
at |
12138114 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 93328 - 93227
Alignment:
| Q |
20 |
gatggaggtcaagacaatgcttgtgcaagagcaagaaactggattcgtgatcacggtggtgtaacacatataccttcatggggaaaaacttggctttcgg |
119 |
Q |
| |
|
||||| |||||| ||||||||||||| ||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
93328 |
gatggcggtcaaaacaatgcttgtgctagagcaagacactggattcgtgttcatggtggtgtaacacatataccttcatggggaaaaacatggctttcgg |
93229 |
T |
|
| Q |
120 |
ta |
121 |
Q |
| |
|
|| |
|
|
| T |
93228 |
ta |
93227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 321
Target Start/End: Complemental strand, 93139 - 93070
Alignment:
| Q |
252 |
tagatacttggtgtatttgattggtctggatgcaacccgatgccccctgagttttggatcctaccttcat |
321 |
Q |
| |
|
|||||||||||| | ||||||||| |||| ||||||| ||||| ||||| |||||| |||| ||||||| |
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| T |
93139 |
tagatacttggtctttttgattggagtggaagcaacccaatgccacctgaattttggctccttccttcat |
93070 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 5670950 - 5670850
Alignment:
| Q |
21 |
atggaggtcaagacaatgcttgtgcaagagcaagaaactggattcgtgatcacggtggtgtaacacatataccttcatggggaaaaacttggctttcggt |
120 |
Q |
| |
|
|||||||| |||| ||||||||||| | ||||||||| ||||||| |||||| |||||||| ||| | |||||||||||||||||| |||||||||||| |
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|
| T |
5670950 |
atggaggtaaagaaaatgcttgtgctaaagcaagaaaatggattcatgatcatggtggtgtgacatacgtaccttcatggggaaaaatttggctttcggt |
5670851 |
T |
|
| Q |
121 |
a |
121 |
Q |
| |
|
| |
|
|
| T |
5670850 |
a |
5670850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 5692696 - 5692596
Alignment:
| Q |
21 |
atggaggtcaagacaatgcttgtgcaagagcaagaaactggattcgtgatcacggtggtgtaacacatataccttcatggggaaaaacttggctttcggt |
120 |
Q |
| |
|
|||||||| |||| ||||||||||| | ||||||||| ||||||| |||||| |||||||| ||| | ||||||||||||||||| |||||||||||| |
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| T |
5692696 |
atggaggtaaagaaaatgcttgtgctaaagcaagaaaatggattcatgatcatggtggtgtgacatacgtaccttcatggggaaaattttggctttcggt |
5692597 |
T |
|
| Q |
121 |
a |
121 |
Q |
| |
|
| |
|
|
| T |
5692596 |
a |
5692596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 5723040 - 5722940
Alignment:
| Q |
21 |
atggaggtcaagacaatgcttgtgcaagagcaagaaactggattcgtgatcacggtggtgtaacacatataccttcatggggaaaaacttggctttcggt |
120 |
Q |
| |
|
|||||||| |||| ||||||||||| | ||||||||| ||||||| |||||| |||||||| ||| | | ||||||||||||||| ||||||||||| |
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|
| T |
5723040 |
atggaggtaaagaaaatgcttgtgctaaagcaagaaaatggattcatgatcatggtggtgtgacatacgtgtcttcatggggaaaaatctggctttcggt |
5722941 |
T |
|
| Q |
121 |
a |
121 |
Q |
| |
|
| |
|
|
| T |
5722940 |
a |
5722940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 5670754 - 5670697
Alignment:
| Q |
253 |
agatacttggtgtatttgattggtctggatgcaacccgatgccccctgagttttggat |
310 |
Q |
| |
|
||||||||||| | ||||||||| || | ||||||| |||||||||||||||||||| |
|
|
| T |
5670754 |
agatacttggtatctttgattggcgtgcaagcaacccaatgccccctgagttttggat |
5670697 |
T |
|
Back To:
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