View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_39 (Length: 326)
Name: NF9779_low_39
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 5640696 - 5640384
Alignment:
| Q |
1 |
ctaaaatgtccttgctgtctgtctttgctctttttctataactaaaattttgtatgtggtcacagcctgttacatttcacatgtttagaaaatttgtctt |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||| |
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| T |
5640696 |
ctaaaatgtccttgctatctgtctttgctctttttctataactaaaattttgtatgtggttactgcctgttacatttcacatgtttagaaaaattgtctt |
5640597 |
T |
|
| Q |
101 |
gcttccttcattattaacacaaattattgaatctgtgttttctattctctagagatggtgaattacacagctgactctgaaagtgcaccaagtggtctgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5640596 |
gcttccttcattattaacacaaattattgaatctgtgttttctattctctagagatggtgaattacacagctgactctgaaagtgcaccaagtggtctgc |
5640497 |
T |
|
| Q |
201 |
tgtatgatcacaggccatatctgttaaataacgatgactatgagagagtttgcctcattccgaagaagaaggttccagatcttgaattgatattatgttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5640496 |
tgtatgatcacaggccatatctgttaaataacgatgactatgagagagtttgcctcattccgaagaagaaggttcctgatcttgaattgatattatgttc |
5640397 |
T |
|
| Q |
301 |
tgttattttatct |
313 |
Q |
| |
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||||||||||||| |
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| T |
5640396 |
tgttattttatct |
5640384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 68 - 313
Target Start/End: Complemental strand, 1338744 - 1338497
Alignment:
| Q |
68 |
tgttacatttcacatgtttagaaaatttgtcttgcttccttcattattaacacaaatta---ttgaatctg-tgttttctattctctagagatggtgaat |
163 |
Q |
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| T |
1338744 |
tgttacatgtcacgtggttagaaaatttgtcttgcttccttcatcattaacctgaactggttttgaatcttatgttttcta--ctccagagatggtgaat |
1338647 |
T |
|
| Q |
164 |
tacacagctgactctgaaagtgcaccaagtggtctgctgtatgatcacaggccatatctgttaaataacgatgactatgagagagtttgcctcattccga |
263 |
Q |
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| T |
1338646 |
tatttggctgactctcaaagtgcaccaagtggtatgctgtatgatcataggcctttgaaattaaataccgatgactatgagagagtttgccacattccaa |
1338547 |
T |
|
| Q |
264 |
agaagaaggttccagatcttgaattgatattatgttctgttattttatct |
313 |
Q |
| |
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|| |||||||||| ||||| |||||||||||||| |||||||||||||| |
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| T |
1338546 |
aggagaaggttccctatctttaattgatattatgtactgttattttatct |
1338497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 79 - 307
Target Start/End: Complemental strand, 9390882 - 9390652
Alignment:
| Q |
79 |
acatgtttagaaaatttgtcttgcttccttcattattaa-cacaaat--tattgaatct-gtgttttctattctctagagatggtgaattacacagctga |
174 |
Q |
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||||| ||||||||| ||||||||||||||||| ||||| | || | | |||||||| |||||||||| ||| ||||||||||||||| | ||||| |
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| T |
9390882 |
acatggttagaaaatctgtcttgcttccttcatcattaagctgaactggtgttgaatcttgtgttttcta--ctccagagatggtgaattattctgctga |
9390785 |
T |
|
| Q |
175 |
ctctgaaagtgcaccaagtggtctgctgtatgatcacaggccatatctgttaaataacgatgactatgagagagtttgcctcattccgaagaagaaggtt |
274 |
Q |
| |
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|||| ||||||||||||||||| |||||||||||||||| || | ||||||| ||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
9390784 |
ctctcaaagtgcaccaagtggtatgctgtatgatcacagacctttgaaattaaataccgatgactatgagagagtttgccacattccaaagaagaaggta |
9390685 |
T |
|
| Q |
275 |
ccagatcttgaattgatattatgttctgttatt |
307 |
Q |
| |
|
|| |||||||||||||||||||| |||||||| |
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|
| T |
9390684 |
tcatatcttgaattgatattatgtactgttatt |
9390652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 32 - 298
Target Start/End: Complemental strand, 31940599 - 31940328
Alignment:
| Q |
32 |
ttttctataactaaaattttgtatgtggtcacagcctgtt---acatttcacatgtttagaaaatttgtcttgcttccttcattattaa-cacaaat--t |
125 |
Q |
| |
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|||| |||||||| |||| |||||||||||| || |||| |||| ||| ||| ||||||||| ||||||||||||||||| | ||| | || | | |
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| T |
31940599 |
ttttttataactagaattgtgtatgtggtcattgcatgttgttacatgtcatatggttagaaaatctgtcttgcttccttcatcagtaaactgaactggt |
31940500 |
T |
|
| Q |
126 |
attgaatct-gtgttttctattctctagagatggtgaattacacagctgactctgaaagtgcaccaagtggtctgctgtatgatcacaggccatatctgt |
224 |
Q |
| |
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|||||||| |||||||||| ||| |||||||| |||||| | ||||||| | | ||||||||||||||| ||||||||||||||||||| | | |
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| T |
31940499 |
gttgaatcttgtgttttcta--ctccagagatggcgaattattctgctgactatcatagtgcaccaagtggtatgctgtatgatcacaggcctttgaaat |
31940402 |
T |
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| Q |
225 |
taaataacgatgactatgagagagtttgcctcattccgaagaagaaggttccagatcttgaattgatattatgt |
298 |
Q |
| |
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|||||| ||||||||||||||||||||||| |||||| ||||||||||| || |||||||||||||||||||| |
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| T |
31940401 |
taaataccgatgactatgagagagtttgccacattccaaagaagaaggtaccgtatcttgaattgatattatgt |
31940328 |
T |
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