View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_4 (Length: 552)
Name: NF9779_low_4
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 19 - 536
Target Start/End: Complemental strand, 27277479 - 27276962
Alignment:
| Q |
19 |
acatctaagctagggagagtcaaatgcagtggaatcttttataagtcttaatcctcggttcaagggagaaggggttttgataaatctaagttcggtcgga |
118 |
Q |
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| T |
27277479 |
acatctaagctagggagagtcaaatgcagtggaatcttttataagtcttaatcctcggttcaagggagaaggggttttgataaatcaaagttcggtcgga |
27277380 |
T |
|
| Q |
119 |
tttggacaatgaccattctagtcaaagattcgaaacagcagaatctgaaactacttcaaatacaactctagaaatttcagaaaaataaagcaacatttag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27277379 |
tttggacaatgaccattctagtcaaagattcgaaacagcagaatctgaaactacttcaaatacaactctagaaatttcagaaaaataaagcaacatttag |
27277280 |
T |
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| Q |
219 |
atttgaaatagaaatttaacttaccaaatgtgtaggcacttggaaacgtagaaccttcacgcaatgtattccggtacaaaatcgtagtatcattaataca |
318 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27277279 |
atttaaaatagaaatttaacttaccaaatgtgtaggcacttggaaacgtagaaccttcacgcaatgtattccggtacaaaatcgtagtatcattaataca |
27277180 |
T |
|
| Q |
319 |
ttcccaatctgcagattcattagcagaaatttccttctcattcaaaggcctaagcctaagtaacacaagaatcttctcttcacaaccactaactccattc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27277179 |
ttcccaatctgcagattcattagcagaaatttccttctcattcaaaggcctaagcctaagtaacacaagaatcttctcttcacaaccactaactccattc |
27277080 |
T |
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| Q |
419 |
atcttctcccatttcgacaactcttctccagcaatagctcccattttctcacacttccaaaccctctttttccacctcaattaacaagctaatcccattt |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27277079 |
atcttctcccatttcgacaactcttctccagcaatagctcccattttctcacacttccaaaccctctttttccacctcaattaacaagctaatcccattt |
27276980 |
T |
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| Q |
519 |
caaaacaacccatgtttc |
536 |
Q |
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|||||||||||||||||| |
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| T |
27276979 |
caaaacaacccatgtttc |
27276962 |
T |
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