View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_40 (Length: 324)
Name: NF9779_low_40
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_40 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 10804300 - 10803995
Alignment:
| Q |
1 |
tgtttttccatgaaggaagaattagaagagtacatggattatgatattggtgaaatatgtaacgatgattggaaactagctcaaaagcttatggttcatg |
100 |
Q |
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| T |
10804300 |
tgtttttccatgaaggaagaattagaagagtacatggattatgatattggtgaaatatgtaacgatgattggaaactagctcaaaagcttatggttcatg |
10804201 |
T |
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| Q |
101 |
gatgtgatcctctaccaaggagaaggtgtttatcaagatcacctaagctatacagtaaaccattccctattaatgaatccatgtggaaactccctgatga |
200 |
Q |
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| T |
10804200 |
gatgtgatcctctaccaaggagaaggtgtttatcaagatcacctaagctatacagtaaaccattccccattaatgaatccatgtggaaactccctgatga |
10804101 |
T |
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| Q |
201 |
cagaaatgttagatggagtcaatataggtgcaagaactttacttgtctagcaagcaataacaatgctcgaaagggattcttcaaatgcgccgattgtttt |
300 |
Q |
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| T |
10804100 |
cagaaatgttagatggagtcaatataggtgcaagaactttacttgtctagcaagcaataacaatgctcgaaagggattcttcaaatgcgccgattgtttt |
10804001 |
T |
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| Q |
301 |
aatctt |
306 |
Q |
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|||||| |
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| T |
10804000 |
aatctt |
10803995 |
T |
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Target: scaffold0010 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 253468 - 253360
Alignment:
| Q |
23 |
tagaagagtacatggattatgatattggtgaaatatgtaacgatgattggaaactagctcaaaagcttatggttcatggatgtgatcctctaccaaggag |
122 |
Q |
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| T |
253468 |
tagaacagtacatggactatgacattggttcatactgtgatgatgattggaatttagctcaaaagcttatgcttaatgggtgtgatcctttacctagaag |
253369 |
T |
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| Q |
123 |
aaggtgttt |
131 |
Q |
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| T |
253368 |
aagatgttt |
253360 |
T |
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