View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_41 (Length: 319)
Name: NF9779_low_41
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 36364095 - 36363871
Alignment:
| Q |
11 |
cagagatgacatgaggtgtccaattgatgttgaggatttaagagtgtttaattatcattgttcgtatatttgaaaaatttatgaacttgccattgtatat |
110 |
Q |
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| T |
36364095 |
cagagatgaaatgaggtgtccagttgatcttgaggatttaagagtgtttaattatcattgttcatatatttgaaaaatttatgaacttgccattgtatat |
36363996 |
T |
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| Q |
111 |
atatcgtaaaatatctacttaaactttctaagaaaaatatcaatattaggaacacttttaaagtgattgtgtatgtgcagctggtggaacagaagaatca |
210 |
Q |
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| T |
36363995 |
atatcgtaaaatatctacttaaactttctaagaaaaatatcaatattaggaataccttaaaagtgattgtgtatgtgcagctggtggaacagaagaatca |
36363896 |
T |
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| Q |
211 |
ccaacaaaaattgaggtagatgatc |
235 |
Q |
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| T |
36363895 |
ccaacaaaaattgaggtagatgatc |
36363871 |
T |
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