View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_42 (Length: 319)
Name: NF9779_low_42
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_42 |
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| [»] scaffold0161 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 32471741 - 32472041
Alignment:
| Q |
7 |
tcattcaccgccggatgtccatacaaaaccgactcaacctccacactactcaaattctcaccaccactaataatcacatcttttgacctatcttttatct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32471741 |
tcattcaccgccggatgtccatacaaaaccgactcaacctccacactactcaaattctcaccaccactaataatcacatcttttgacctatcttttatct |
32471840 |
T |
|
| Q |
107 |
ctaaatacccatcttcatgcattacacctacatcaccagtgtaaaaccaacccttcttaaaacaattctttgttccttcactatctttcaaataccctaa |
206 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32471841 |
ctaaatacccatcttcatgcatcacacctacatcaccagtgtaaaaccaacccttcttaaaacaattttttgttccttcactatctttcaaataccctaa |
32471940 |
T |
|
| Q |
207 |
cataacacaaccacctctcataacaacttcaccaagcgttgcaccatcacgttttacactttcaccacttggacccaccacatcaacctttgtcatccct |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32471941 |
cataacacaaccacctctcataacaacttcaccaagcgttgcaccatcacgttttacactttcaccacttggacccactacatcaacctttgtcatccct |
32472040 |
T |
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| Q |
307 |
a |
307 |
Q |
| |
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| T |
32472041 |
a |
32472041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 32456025 - 32456162
Alignment:
| Q |
27 |
atacaaaaccgactcaacctccacactactcaaattctcaccaccactaataatcacatcttttgacctatcttttatctctaaatacccatcttcatgc |
126 |
Q |
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| T |
32456025 |
atacaaaaccccctcaacctccacactactcatattctctccgccacttattatcaaatcttttgacctatctttaatctccaaatacccatcctcatgc |
32456124 |
T |
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| Q |
127 |
attacacctacatcaccagtgtaaaaccaacccttctt |
164 |
Q |
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| T |
32456125 |
ataaccgcaacatcacccgtataaaaccaaccattctt |
32456162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 32465124 - 32464979
Alignment:
| Q |
13 |
accgccggatgtccatacaaaaccgactcaacctccacactactcaaattctcaccaccactaataatcacatcttttgacctatcttttatctctaaat |
112 |
Q |
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||||||||||| ||||||||| | |||||||||||||||||||| |||||| |||||||| || ||||||||||||| |||||| || ||||| | || |
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| T |
32465124 |
accgccggatgcatatacaaaacagcctcaacctccacactactcatattctctccaccacttattatcacatcttttgtcctatccttaatctccatat |
32465025 |
T |
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| Q |
113 |
acccatcttcatgcattacacctacatcaccagtgtaaaaccaacc |
158 |
Q |
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| T |
32465024 |
acccattcttatgtataaccccaacatcacccgtgtaaaaccaacc |
32464979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 32464945 - 32464839
Alignment:
| Q |
189 |
atctttcaaataccctaacataacacaaccacctctcataacaacttcaccaagcgttgcaccatcacgttttacactttcaccacttggacccaccaca |
288 |
Q |
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|||||| ||||| || | |||||||||| ||||| | | ||| | |||||||| |||| |||||||| ||||||||||||||| | || || |||||| |
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| T |
32464945 |
atcttttaaataaccaagcataacacaagcaccttttacaacgatttcaccaaccgttacaccatcattctttacactttcaccagtgggtccgaccaca |
32464846 |
T |
|
| Q |
289 |
tcaacct |
295 |
Q |
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| T |
32464845 |
tcaacct |
32464839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 164
Target Start/End: Complemental strand, 24528 - 24403
Alignment:
| Q |
39 |
ctcaacctccacactactcaaattctcaccaccactaataatcacatcttttgacctatcttttatctctaaatacccatcttcatgcattacacctaca |
138 |
Q |
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|||||| ||||||||||||| |||||| |||||||| || |||||||||||| ||||||| || ||||| ||||||||||| |||||||| || | ||| |
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| T |
24528 |
ctcaacttccacactactcatattctccccaccacttattatcacatcttttaacctatccttaatctccaaatacccatcctcatgcataaccgcaaca |
24429 |
T |
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| Q |
139 |
tcaccagtgtaaaaccaacccttctt |
164 |
Q |
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||||| || ||||||||||| ||||| |
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| T |
24428 |
tcacctgtataaaaccaaccattctt |
24403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 29003809 - 29003880
Alignment:
| Q |
75 |
aataatcacatcttttgacctatcttttatctctaaatacccatcttcatgcattacacctacatcaccagt |
146 |
Q |
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||||||||||||||| ||||||||||| || || ||||| ||||||| ||| || ||||| ||||||||||| |
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| T |
29003809 |
aataatcacatctttagacctatctttaatttccaaataaccatctttatgtataacaccaacatcaccagt |
29003880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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