View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_45 (Length: 308)
Name: NF9779_low_45
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 32708576 - 32708858
Alignment:
| Q |
1 |
acggctctcatgcactgcatcacattgtatgcaccatcgccgagtgattcagacatttgagactcacaagcaagagcattccattgatcaagagcattcc |
100 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32708576 |
acggctctcatgcactgcatgacattgtatgcaccatcgccaagtgattcagacatttgagactcacaagcaagagcattccattgatcaagagcattcc |
32708675 |
T |
|
| Q |
101 |
aattcacttcagaaactcccaatcgatcgatggtaaatgatccttctttgagaacttccaatttcacttccgatggagatggagtgtattgagggatgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32708676 |
aattcacttcagaaactcccaatcgatcgatggtaaatgatccttctttgagaacttccaatttcacttccgatggagatggagtgtattgagggatgtt |
32708775 |
T |
|
| Q |
201 |
gaaagtatcaagctcctcttcttttatggttccctaatccacagaaaaaaggaatttcatatatattaatatcttggtgaattcgat |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||| |
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| T |
32708776 |
gaaagtatcaagctcctcttcttttatggttccctaatccacataaaaaaggaatttc----atattagtatcttggtgaattcgat |
32708858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 32627031 - 32627132
Alignment:
| Q |
135 |
aaatgatccttctttgagaacttccaatttcacttccgatggagatggagtgtattgagggatgttgaaagtatcaagctcctcttcttttatggttccc |
234 |
Q |
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|||||||||||| | | |||||||||||||||||| |||||||||||| ||| ||| ||||||||||||| || | ||||||||||||| ||||| |
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| T |
32627031 |
aaatgatccttcagtaataacttccaatttcacttcagatggagatggataatatataggaatgttgaaagtattgagtttctcttcttttatgattccc |
32627130 |
T |
|
| Q |
235 |
ta |
236 |
Q |
| |
|
|| |
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|
| T |
32627131 |
ta |
32627132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 208
Target Start/End: Original strand, 27735949 - 27736133
Alignment:
| Q |
24 |
attgtatgcaccatcgccgagtgattcagacatttgagactcacaagcaagagcattccattgatcaagagcattccaattcacttcagaaactcccaat |
123 |
Q |
| |
|
||||||| || |||| | ||||||||| ||||||| ||| ||| | ||| ||||| || | |||||||||||||||||| ||||||||||| ||||| |
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| T |
27735949 |
attgtatccatcatctctgagtgattctgacatttcagattcaaagtcaaaggcattacaatcatcaagagcattccaattaacttcagaaacctccaat |
27736048 |
T |
|
| Q |
124 |
cgatcgatggtaaatgatccttctttgagaacttccaatttcacttccgatggagatggagtgtattgagggatgttgaaagtat |
208 |
Q |
| |
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|| |||| |||||||||||| |||||||||||||| |||||||| |||||||||||| || | ||||||||||||||||| |
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| T |
27736049 |
ttattgatgacaaatgatccttcattgagaacttccaacttcacttcagatggagatggataataattagggatgttgaaagtat |
27736133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 5810680 - 5810796
Alignment:
| Q |
88 |
tcaagagcattccaattcacttcagaaactcccaatcgatcgatggtaaatgatccttctttgagaacttccaatttcacttccgatggagatggagtgt |
187 |
Q |
| |
|
||||||||||||||||| ||||||||||| | |||||| ||||| ||||||||||| ||||||||||||| | || || |||||||||||| | |
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| T |
5810680 |
tcaagagcattccaatttacttcagaaacctctaatcgactgatggagaatgatccttcggtgagaacttccaactcaacctcagatggagatggataat |
5810779 |
T |
|
| Q |
188 |
attgagggatgttgaaa |
204 |
Q |
| |
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| | ||||||||||||| |
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| T |
5810780 |
agttagggatgttgaaa |
5810796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 20118000 - 20117936
Alignment:
| Q |
119 |
ccaatcgatcgatggtaaatgatccttctttgagaacttccaatttcacttccgatggagatgga |
183 |
Q |
| |
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||||| |||||||| |||||| ||||| | |||||||||||||||||||| | |||||||||| |
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|
| T |
20118000 |
ccaattgatcgatgacaaatgacccttcagttagaacttccaatttcacttcagttggagatgga |
20117936 |
T |
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