View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9779_low_46 (Length: 306)

Name: NF9779_low_46
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9779_low_46
NF9779_low_46
[»] chr4 (2 HSPs)
chr4 (18-298)||(31160267-31160547)
chr4 (196-279)||(43733959-43734042)
[»] chr8 (1 HSPs)
chr8 (188-289)||(32229936-32230037)
[»] chr6 (2 HSPs)
chr6 (191-290)||(21952506-21952605)
chr6 (193-230)||(14453398-14453435)
[»] chr5 (2 HSPs)
chr5 (199-290)||(33645916-33646007)
chr5 (193-228)||(10813145-10813180)
[»] scaffold0996 (1 HSPs)
scaffold0996 (196-285)||(1491-1580)
[»] chr2 (3 HSPs)
chr2 (191-290)||(8070975-8071074)
chr2 (193-298)||(33054878-33054982)
chr2 (199-299)||(22049781-22049881)
[»] chr1 (1 HSPs)
chr1 (196-279)||(33978131-33978214)
[»] chr3 (1 HSPs)
chr3 (193-228)||(54548327-54548362)
[»] chr7 (1 HSPs)
chr7 (199-280)||(42562071-42562152)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 31160267 - 31160547
Alignment:
Q  18 attaccgaggagatctatctattaatgaggagacaatggaatataaaagaagcagtcgatgaatagtgtgacaagggaaggaccaaatataaaaacatcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31160267 attaccgaggagatctatctattaatgaggagacaatggaatataaaagaagcagtcgatgaatagtgtgacaagggaaggaccaaatataaaaacatcc 31160366  T
Q  118 aaaatattcggatggacagccaaaataaactataatatatctacacaaatttattttttaataaaattgaacacaatagctagagcttccttatctcatc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||    
T  31160367 aaaatattcggatggacagccaaaataaactataatatatctacacaaattaattttttaataaaattgaacacaatagctaaaacttccttatctcatc 31160466  T
Q  218 ctagccaccatattcttaatgatgtatctgactacttgtactctttgattattaatgaaatgacttaagtttgtctctgct 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  31160467 ctagccaccatattcttaatgatgtatctgactacttgtactctttgattattaatgaaatggcttaagtttgtctttgct 31160547  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 43733959 - 43734042
Alignment:
Q  196 gctagagcttccttatctcatcctagccaccatattcttaatgatgtatctgactactt-gtactctttgattattaatgaaatg 279  Q
    ||||||||| |||||||||||||||||| ||||||  || |||||||||||  |||||| ||| || ||||||||||||||||||    
T  43733959 gctagagctgccttatctcatcctagcccccatatctttcatgatgtatct-tctacttggtattccttgattattaatgaaatg 43734042  T

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Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 188 - 289
Target Start/End: Complemental strand, 32230037 - 32229936
Alignment:
Q  188 acacaatagctagagcttccttatctcatcctagccaccatattcttaatgatgtatctgactacttgtactctttgattattaatgaaatgacttaagt 287  Q
    |||| ||||||||||||||||||||||| |||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32230037 acactatagctagagcttccttatctcaccctagccttcatatttttaatgatgtatctgactacttgtactctttgattattaatgaaatggcttaagt 32229938  T
Q  288 tt 289  Q
    ||    
T  32229937 tt 32229936  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 191 - 290
Target Start/End: Original strand, 21952506 - 21952605
Alignment:
Q  191 caatagctagagcttccttatctcatcctagccaccatattcttaatgatgtatctgactacttgtactctttgattattaatgaaatgacttaagtttg 290  Q
    ||||||| |||||||||||||| |||||||||| | || || |  |||||||| | || |||||||||||||| || |||||||||||| ||||||||||    
T  21952506 caatagcaagagcttccttatcccatcctagccccaatgttttatatgatgtacccgattacttgtactctttaatcattaatgaaatggcttaagtttg 21952605  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 14453435 - 14453398
Alignment:
Q  193 atagctagagcttccttatctcatcctagccaccatat 230  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  14453435 atagctagagcatccttatctcatcctagcccccatat 14453398  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 290
Target Start/End: Complemental strand, 33646007 - 33645916
Alignment:
Q  199 agagcttccttatctcatcctagccaccatattcttaatgatgtatctgactacttgtactctttgattattaatgaaatgacttaagtttg 290  Q
    ||||||||||||||||| |||| || | ||||| |  |||||||| | || |||||||||||||| || |||||||||||||| ||||||||    
T  33646007 agagcttccttatctcaccctatccccaatattttatatgatgtacccgattacttgtactctttaatcattaatgaaatgacctaagtttg 33645916  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 10813180 - 10813145
Alignment:
Q  193 atagctagagcttccttatctcatcctagccaccat 228  Q
    ||||||||||||||||||||||||||||||| ||||    
T  10813180 atagctagagcttccttatctcatcctagcccccat 10813145  T

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Target: scaffold0996 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 285
Target Start/End: Complemental strand, 1580 - 1491
Alignment:
Q  196 gctagagcttccttatctcatcctagccaccatattcttaatgatgtatctgactac-ttgtactctttgattattaatgaaatgacttaa 285  Q
    |||||||||||||||| ||||||||||| ||||||| |||||| |||| ||  |||| |||||||| || ||||| |||||||||||||||    
T  1580 gctagagcttccttatgtcatcctagcccccatatttttaatgttgtacct-tctactttgtactccttaattatgaatgaaatgacttaa 1491  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 290
Target Start/End: Complemental strand, 8071074 - 8070975
Alignment:
Q  191 caatagctagagcttccttatctcatcctagccaccatattcttaatgatgtatctgactacttgtactctttgattattaatgaaatgacttaagtttg 290  Q
    ||||||| |||||||||||||| || ||||||| | || || |  |||||||| | || |||||||||||||| || |||||||||||| | ||||||||    
T  8071074 caatagcaagagcttccttatcccaccctagccccaatgttttatatgatgtacccgattacttgtactctttaatcattaatgaaatggcctaagtttg 8070975  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 298
Target Start/End: Original strand, 33054878 - 33054982
Alignment:
Q  193 atagctagagcttccttatctcatcctagccaccatattcttaatgatgtatctgactacttgtactctttgattattaatgaaatgacttaagtttgtc 292  Q
    ||||||||||| ||| ||||||| ||||||| | ||||  || |||||||| |  | || ||||| ||||| ||||||||||||||| |||||| |||||    
T  33054878 atagctagagcatccctatctcaccctagcccctatatctttgatgatgtaccaca-tatttgtattctttaattattaatgaaatggcttaagcttgtc 33054976  T
Q  293 tctgct 298  Q
    | ||||    
T  33054977 tttgct 33054982  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 299
Target Start/End: Original strand, 22049781 - 22049881
Alignment:
Q  199 agagcttccttatctcatcctagccaccatattcttaatgatgtatctgactacttgtactctttgattattaatgaaatgacttaagtttgtctctgct 298  Q
    ||||| ||||||||| | ||| ||| ||||||| ||||||||||| ||  ||| |||||  |||| ||||| ||||||||||| ||  ||||||| ||||    
T  22049781 agagcgtccttatcttaccctcgcccccatatttttaatgatgtaccttcctatttgtaacctttaattatgaatgaaatgacatagttttgtctttgct 22049880  T
Q  299 t 299  Q
    |    
T  22049881 t 22049881  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 33978214 - 33978131
Alignment:
Q  196 gctagagcttccttatctcatcctagccaccatattcttaatgatgtatctgactac-ttgtactctttgattattaatgaaatg 279  Q
    |||||||||||||||| ||||||||||| ||||||| |||||| |||| ||  |||| |||||||| || ||||| |||||||||    
T  33978214 gctagagcttccttatgtcatcctagcccccatatttttaatgttgtacct-tctactttgtactccttaattatgaatgaaatg 33978131  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 54548362 - 54548327
Alignment:
Q  193 atagctagagcttccttatctcatcctagccaccat 228  Q
    ||||||||||||||||||||||||||||||| ||||    
T  54548362 atagctagagcttccttatctcatcctagcccccat 54548327  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 280
Target Start/End: Original strand, 42562071 - 42562152
Alignment:
Q  199 agagcttccttatctcatcctagccaccatattcttaatgatgtatctgactacttgtactctttgattattaatgaaatga 280  Q
    ||||| ||||||||| ||| || || ||||||| || |||||||| |    |||||||||||||||||||||||| ||||||    
T  42562071 agagcatccttatctaatcttaacccccatattttttatgatgtaccctcttacttgtactctttgattattaataaaatga 42562152  T

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