View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_48 (Length: 302)
Name: NF9779_low_48
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 28 - 292
Target Start/End: Complemental strand, 43564993 - 43564729
Alignment:
| Q |
28 |
tgcaaaccctctgattcaaatgccccaccttcactccttcaaaaagttattgctttttctcaaaaaggtggtttctttggattctccaatgaaacccctt |
127 |
Q |
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|||||||||||||| |||||||| ||||||||| |||||||||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||||| | |
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| T |
43564993 |
tgcaaaccctctgaatcaaatgctccaccttcaatccttcaaaaagttcttgatttttctcacaaaggtggtttctttggattctctcatgaaaccccgt |
43564894 |
T |
|
| Q |
128 |
ctgatagattgatgaattcattgggtagtttcaatggaaaagactttgtgagtattttcaggttcaaaacatggtggtctactcaatgggttggtaaatc |
227 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || ||||| |
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| T |
43564893 |
ctgatagattgatgaattcattaggtagtttcaatggaaaagactttgtgagtattttcaggttcaaaacgtggtggtccactcaatgggtaggaaaatc |
43564794 |
T |
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| Q |
228 |
tggttctgatttacaaatggaaactcaatggattctttttgatattcctgaaatcaaatcctatg |
292 |
Q |
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| T |
43564793 |
tggttctgatttacaaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatg |
43564729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 36432958 - 36432682
Alignment:
| Q |
18 |
ctcttctatttgcaaaccctctgattcaaatgccccaccttcactccttcaaaaagttattgctttttctcaaaaaggtggtttctttggattctccaat |
117 |
Q |
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||||||||| || ||||||||||| |||||||| |||||||||||| || | ||| || |||||||||| ||||||||||||||||||||||||||| |
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| T |
36432958 |
ctcttctatatgtaaaccctctgagtcaaatgcaccaccttcactcgttgaccgtgttctttctttttctcacaaaggtggtttctttggattctccaat |
36432859 |
T |
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| Q |
118 |
gaaaccccttctgatagattgatgaattcattgggtagtttcaatggaaaagactttgtgagtattttcaggttcaaaacatggtggtctactcaatggg |
217 |
Q |
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| T |
36432858 |
gaaaccccatctgatagattcatgaattcattaggtagtttcaatggtagaaactttgtcagtatttttaggttcaaaacttggtggtctactcaatgga |
36432759 |
T |
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| Q |
218 |
ttggtaaatctggttctgatttacaaatggaaactcaatggattctttttgatattcctgaaatcaaatcctatgct |
294 |
Q |
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| || | ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
36432758 |
taggaagatctggttctgatttgcaaatggaaactcaatggattctttttgagattcctgaaatcagatcctatgct |
36432682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 43973599 - 43973873
Alignment:
| Q |
18 |
ctcttctatttgcaaaccctctgattcaaatgccccaccttcactccttcaaaaagttattgctttttctcaaaaaggtggtttctttggattctccaat |
117 |
Q |
| |
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|||| |||| |||||| ||||||| |||||||| ||||||||||| ||||| ||| |||||||||||| |||||||||||||||||||||||| || |
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| T |
43973599 |
ctctgctatatgcaaaacctctgaatcaaatgcaccaccttcacttgttcaacgtgttcatgctttttctcacaaaggtggtttctttggattctcccat |
43973698 |
T |
|
| Q |
118 |
gaaaccccttctgatagattgatgaattcattgggtagtttcaatggaaaagactttgtgagtattttcaggttcaaaacatggtggtctactcaatggg |
217 |
Q |
| |
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|||||||||||||||||||||||||| || || |||||||| |||||||||||||||| ||| |||| ||||||||||| |||||||||| ||||||| |
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| T |
43973699 |
gaaaccccttctgatagattgatgaactctttaggtagttttcatggaaaagactttgtcagtgtttttaggttcaaaacttggtggtctagtcaatgga |
43973798 |
T |
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| Q |
218 |
ttggtaaatctggttctgatttacaaatggaaactcaatggattctttttgatattcctgaaatcaaatcctatg |
292 |
Q |
| |
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| || || ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43973799 |
taggaaattctggatctgatttacaaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatg |
43973873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 8952158 - 8952431
Alignment:
| Q |
18 |
ctcttctatttgcaaaccctctgattcaaatgccccaccttcactccttcaaaaagttattgctttttctcaaaaaggtggtttctttggattctccaat |
117 |
Q |
| |
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|||| |||| |||||| ||||||| |||||||| ||||||||||| ||||| | ||| ||||||||||| |||||||||||||||||||||||| || |
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| T |
8952158 |
ctctgctatatgcaaaacctctgaatcaaatgcaccaccttcacttgttcaacatgttcatgctttttctcgcaaaggtggtttctttggattctcccat |
8952257 |
T |
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| Q |
118 |
gaaaccccttctgatagattgatgaattcattgggtagtttcaatggaaaagactttgtgagtattttcaggttcaaaacatggtggtctactcaatggg |
217 |
Q |
| |
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|||||||||||||||||||||||||| || || |||||||| ||||||||| ||||||| ||| |||| ||| ||||||| |||||||||| ||||||| |
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| T |
8952258 |
gaaaccccttctgatagattgatgaactctttaggtagttttaatggaaaa-actttgttagtgtttttaggctcaaaacttggtggtctagtcaatgga |
8952356 |
T |
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| Q |
218 |
ttggtaaatctggttctgatttacaaatggaaactcaatggattctttttgatattcctgaaatcaaatcctatg |
292 |
Q |
| |
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| || || ||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
8952357 |
taggaaattctggatctgatttacaaatggaaaatcaatggattctcattgatattcctgaaatcaaatcctatg |
8952431 |
T |
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