View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_49 (Length: 300)
Name: NF9779_low_49
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 3 - 289
Target Start/End: Complemental strand, 51507585 - 51507300
Alignment:
| Q |
3 |
atcgtattcagtgtcttcttctgtctctccatgcctctctaagagaggttccaattcatgcattgttattgtgggccaaggcaaattcataatgggatgg |
102 |
Q |
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| T |
51507585 |
atcgtattcagtgtcttcttctgtctctccatgcctctctaagagaggttccaattcatgcattgttattgtgggccaaggcaaattcataatgggatgg |
51507486 |
T |
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| Q |
103 |
accatttggcttgatactctttgctttctagtcnnnnnnnnnnaatggaaaatatgcttacgattttttaatcgacttattgaacttatgataataatta |
202 |
Q |
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| T |
51507485 |
accatttggcttgatactctttgctttctagtcttttttttt-aatggaaaatatgcttacgattttttaatcgacttattgaacttatgataataatta |
51507387 |
T |
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| Q |
203 |
atattataacaacaagctatgttttcaacaggttggtgcagatgataaggctgttctggatcaaatcattgattctttaacctctct |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51507386 |
atattataacaacaagctatgttttcaacaggttggtgcagatgataaggctgttctggatcaaatcattgattctttaacctctct |
51507300 |
T |
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