View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_52 (Length: 277)
Name: NF9779_low_52
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 41979643 - 41979894
Alignment:
| Q |
16 |
agacatcgaaggcgcaaaagttgagaatcacaagttttgtgtttctgtacattaccgtaatgtagaagagaatgtaaggattaattgcctacccccaacc |
115 |
Q |
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| T |
41979643 |
agacatcgaaggcgcaaaagttgagaatcacaagttttgcgtttctgtacattaccgtaatgtagaagagaatgtaaggattaattgcctacccccaacc |
41979742 |
T |
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| Q |
116 |
atcgatttcttctttttaatctcatttcatgttctcacctttcttgaattgattgcagaattggacggtgattgctcaacgtgtccatgatatcttgaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
41979743 |
atcgatttcttctttttaatctcatttcatgttctcacctttcttgaattgattgcagaattggacagtgattgctcaacgtgtccatgatattttgaaa |
41979842 |
T |
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| Q |
216 |
aattaccctcgtttacgttcaactcatggaaggaaggtataatattcctatg |
267 |
Q |
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| T |
41979843 |
aattaccctcgtttacgttcaactcatggaaggaaggtataatattcctatg |
41979894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 1566579 - 1566644
Alignment:
| Q |
16 |
agacatcgaaggcgcaaaagttgagaatcacaagttttgtgtttctgtacattaccgtaatgtaga |
81 |
Q |
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| T |
1566579 |
agacatcaaaggagcaaaaattgagaacaacaagttttgtgtgtctgtacattatcgtaatgtaga |
1566644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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