View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_57 (Length: 264)
Name: NF9779_low_57
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_57 |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 15938870 - 15938636
Alignment:
| Q |
16 |
aggggaattaattgtctctagttatttt-tctctctcatgtttctcaagtggagaaatccccacccttaaattaattttttcactctttctctttctctc |
114 |
Q |
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| T |
15938870 |
aggggaattaattgtctctagtttttttctctctctcatgtttctcaagtggagaaatccccacccttaaattaattttttcactctttctctttctctc |
15938771 |
T |
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| Q |
115 |
tcattgcaaatcaagggatgaaaatacattggactctaatgtcagtcgtgacaatcctctcctgatatggagtgagagaaagatttgaatattttttgtt |
214 |
Q |
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| T |
15938770 |
tcattgcaaatcaagggatgaaaatacattggactcttatgtcagtcgtgacaatcctctcccgatatggagtgagagaaagatttgaatattttttgtt |
15938671 |
T |
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| Q |
215 |
gttggagtgttcatgtcaaagtgaaccgacaattt |
249 |
Q |
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| T |
15938670 |
gttggagtgttcatgtcaaagtgaaccgacaattt |
15938636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 13366577 - 13366498
Alignment:
| Q |
101 |
tttctctttctctctcattgcaaatcaagggatgaaaatacattggactctaatgtcagtcgtgacaatcctctcctgat |
180 |
Q |
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| T |
13366577 |
tttctctttctctctcattgcaaatcaagagatggaaattcactgaactctaatgtcacatgagacaatcctctcctgat |
13366498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 156
Target Start/End: Original strand, 6998966 - 6999084
Alignment:
| Q |
39 |
atttttctctctcatgtttctcaagtggagaaatccccacccttaaattaattttttcac-tctttctctttctctctcattgcaaatcaagggatgaaa |
137 |
Q |
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| T |
6998966 |
atttttttctctcatgtttctcaagtggagaaatcaccacccttaaattcaccctttcccttttttctctttctctctcattgcaaatcaagggatagaa |
6999065 |
T |
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| Q |
138 |
atacattggactctaatgt |
156 |
Q |
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| T |
6999066 |
atacactgaactctaatgt |
6999084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 38071365 - 38071438
Alignment:
| Q |
101 |
tttctctttctctctcattgcaaatcaagggatgaaaatacattggactctaatgtcagtcgtgacaatcctct |
174 |
Q |
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| T |
38071365 |
tttctctttctctctcattgcaaatcaagggatggaaattcactcgactctaatgtcacatgagacaatcctct |
38071438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 158
Target Start/End: Complemental strand, 2985387 - 2985280
Alignment:
| Q |
48 |
tctcatgtttctcaagtggagaaatccccacccttaaattaattttttcactctttctctttctctctcattgcaaatcaagggatgaaaatacattgga |
147 |
Q |
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| T |
2985387 |
tctcatgtttctcaagcggagaaatctccacccttaaattcatctttt---tccttttttctctctcgcattataaatcaagggatggaaatgcactgga |
2985291 |
T |
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| Q |
148 |
ctctaatgtca |
158 |
Q |
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| T |
2985290 |
ctctaatgtca |
2985280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 176
Target Start/End: Complemental strand, 39642229 - 39642124
Alignment:
| Q |
70 |
aatccccacccttaaattaattttttcactctttctctttctctctcattgcaaatcaagggatgaaaatacattggactctaatgtcagtcgtgacaat |
169 |
Q |
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| T |
39642229 |
aatccccacccttaaatgcatcttttcccttttt-tctctttctctcattgcatatcaagggatggaaattcactggactctaacgtcacaggagacaat |
39642131 |
T |
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| Q |
170 |
cctctcc |
176 |
Q |
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| T |
39642130 |
cctctcc |
39642124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 44544935 - 44544983
Alignment:
| Q |
101 |
tttctctttctctctcattgcaaatcaagggatgaaaatacattggact |
149 |
Q |
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| T |
44544935 |
tttctctttctctctcattgcaaatcaagagatggaaattcactggact |
44544983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 113837 - 113898
Alignment:
| Q |
57 |
tctcaagtggagaaatccccacccttaaattaattttttcactctttctctttctctctcat |
118 |
Q |
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| T |
113837 |
tctcaagtggagaaaccctcacccttaaattctccttttccctttttctctttctctctcat |
113898 |
T |
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