View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_58 (Length: 262)
Name: NF9779_low_58
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_58 |
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| [»] scaffold0331 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 5641168 - 5640938
Alignment:
| Q |
18 |
tctattgtcataatgcaggagattactgtagcttataccactaatgaaaagtgtcagcttgccccagcgttgtacctgggtgacgcaattgatgacctcc |
117 |
Q |
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| T |
5641168 |
tctattgtcataatgcaggagattactgtagcttataccactaatgaaaaatgtcagctcgccccagcgttgtacctgggtgacgcaattgatgacctcc |
5641069 |
T |
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| Q |
118 |
ctccagtatgttaattttgctcacaaatacattgtgaatata--gtgtttgatttgtaaaaaatttatttccatttctttccnnnnnnnnnnnnctttta |
215 |
Q |
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| T |
5641068 |
ctccagtatgttaattttgctcacaaatacattgtgaatatagtgtgtttgattagtaaaaaatttatttccatttctttcc---tttttttttctttta |
5640972 |
T |
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| Q |
216 |
tcaatcaggttgaaaatgatgacagcgatgatga |
249 |
Q |
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| T |
5640971 |
tcaatcaggttgaaaatgatgacagcgatgatga |
5640938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 161
Target Start/End: Complemental strand, 31941121 - 31940985
Alignment:
| Q |
25 |
tcataatgcaggagattactgtagcttataccactaatgaaaagtgtcagcttgccccagcgttgtacctgggtgacgcaattgatgacctccctccagt |
124 |
Q |
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| T |
31941121 |
tcataatgcaggaaattacagttgcatattccactaatgaaaattgtcagctggccaaggcattaaaccttgaggatgcaattaatgatctcccaccagt |
31941022 |
T |
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| Q |
125 |
atgttaattttgctcacaaatacattgtgaatatagt |
161 |
Q |
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| T |
31941021 |
atgttgattttgttcactaatacattgtgaatatagt |
31940985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 13537595 - 13537537
Alignment:
| Q |
99 |
gacgcaattgatgacctccctccagtatgttaattttgctcacaaatacattgtgaata |
157 |
Q |
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| T |
13537595 |
gacgcaatagatgatctccctccagtacgtttattttgctcacaaatacattatgaata |
13537537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 31940937 - 31940898
Alignment:
| Q |
210 |
cttttatcaatcaggttgaaaatgatgacagcgatgatga |
249 |
Q |
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| T |
31940937 |
cttttatcaaacaggttgaaaatgatgatagcgatgatga |
31940898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 161
Target Start/End: Complemental strand, 1339285 - 1339149
Alignment:
| Q |
25 |
tcataatgcaggagattactgtagcttataccactaatgaaaagtgtcagcttgccccagcgttgtacctgggtgacgcaattgatgacctccctccagt |
124 |
Q |
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| T |
1339285 |
tcataatgcaggcaataacagttgcatattccactaatgaaaagtgtcagctggccaaggcattataccttggggacacaattgatgatctcccaccggt |
1339186 |
T |
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| Q |
125 |
atgttaattttgctcacaaatacattgtgaatatagt |
161 |
Q |
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| T |
1339185 |
atgttgtttttgctcacagatacattcttaatatagt |
1339149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0331 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0331
Description:
Target: scaffold0331; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 2564 - 2603
Alignment:
| Q |
210 |
cttttatcaatcaggttgaaaatgatgacagcgatgatga |
249 |
Q |
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| T |
2564 |
cttttatcaaacaggttgaaaatgatgatagcgatgatga |
2603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0331; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 2454 - 2516
Alignment:
| Q |
99 |
gacgcaattgatgacctccctccagtatgttaattttgctcacaaatacattgtgaatatagt |
161 |
Q |
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| T |
2454 |
gacgcaattaatgatctcccactagtatgttgattttgttcactgatacattgtgaatatagt |
2516 |
T |
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