View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_60 (Length: 254)
Name: NF9779_low_60
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_60 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 36 - 249
Target Start/End: Complemental strand, 27342488 - 27342268
Alignment:
| Q |
36 |
tgaaactttgtgtgatttgaattcaaccccttgtgagtcaaagaaagcaaattggaaaaaactatgaagtgatgaagattttagagagagaaaatgaata |
135 |
Q |
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| T |
27342488 |
tgaaactttgtgtgatttgaattcaaccccttgtgagtcaaagaaagcaaattggaaaaaactatgaagtgatgaagattttagagagagaaaatgaaga |
27342389 |
T |
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| Q |
136 |
at-------attgagatttaagagagagaaaatggaacacaatgagcagtggtcaaacctaaacaataccaaaatttattgaattcattaaaataatgtt |
228 |
Q |
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| T |
27342388 |
atgaagaatattgagatttaagagagagaaaatggaacacaatgagcagtggtcaaacctaaacaataccaaaatttattgaattcattaaaataatgtt |
27342289 |
T |
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| Q |
229 |
ttgtttcattaaacaccaaac |
249 |
Q |
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| T |
27342288 |
ttgtttcattaaacaccaaac |
27342268 |
T |
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