View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_61 (Length: 253)
Name: NF9779_low_61
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_61 |
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| [»] scaffold0331 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 58 - 245
Target Start/End: Complemental strand, 5640855 - 5640668
Alignment:
| Q |
58 |
attaaagagaagtggtatgttttctattgatttttgagttttgaagtatatcagtcttggttgtttgcctttttagtacttcgttgtctttgcatgaaag |
157 |
Q |
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| T |
5640855 |
attaaagagaagtggtatgttttctattgatttttgagttttgaagtagattagtcttggttgtttgcctttttagtaatttgttgtctttgcatgaaag |
5640756 |
T |
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| Q |
158 |
atgtctgttgnnnnnnnatgaacgaatggttcttatttcaaagtgttcatatttatcagctaaaatgtccttgctgtctgtctctgct |
245 |
Q |
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| T |
5640755 |
atgtctgttgtttttttatgaacgaatggttcatatttcaaagtgttcatatttatcagctaaaatgtccttgctatctgtctttgct |
5640668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 5640946 - 5640856
Alignment:
| Q |
1 |
cgatgatgaaaagagttatgggactactcctcgtactgattttcagagatatattagattaaagagaagtggtatgttttctattgatttt |
91 |
Q |
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| T |
5640946 |
cgatgatgaaaagagttatgggaccactcctcgtactgattttcagagatatattagattaaagagaagtggtatgttttctattgatttt |
5640856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 31940906 - 31940749
Alignment:
| Q |
1 |
cgatgatgaaaagagttatgggactactcctcgtactgattttcagagatatattagattaaagagaagtggtatgttttctattgatttttgagttttg |
100 |
Q |
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| T |
31940906 |
cgatgatgaaaggagctatgggactactcctcgtactgattttcaaaaatatatcagattaaagagaagtggtaagttttgtattgatttttgagttttg |
31940807 |
T |
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| Q |
101 |
aagtatatcagtcttggttgtttgcctttttagtacttcgttgtctttgc-atgaaagatgtc |
162 |
Q |
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| T |
31940806 |
aagt-----agtcttggttgtttgcttttttagtactctgttgtcattgcaatgaaagatgtc |
31940749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 13537396 - 13537346
Alignment:
| Q |
60 |
taaagagaagtggtatgttttctattgatttttgagttttgaagtatatca |
110 |
Q |
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| T |
13537396 |
taaagagaagtggtatgatttgtatttattttttagttttgaagtatatca |
13537346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 162
Target Start/End: Complemental strand, 9391242 - 9391086
Alignment:
| Q |
2 |
gatgatgaaaagagttatgggactactcctcgtactgattttcagagatatattagattaaagagaagtggtatgttttctattgatttttgagttttga |
101 |
Q |
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| T |
9391242 |
gatgatgaaaggagctatgggactactcctcgtactgattttcaaaaatatatcagattacagagaagtggtaagttttgtattgatttttgagttttga |
9391143 |
T |
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| Q |
102 |
agtatatcagtcttggttgtttgcctttttagtacttcgttgtctttgc-atgaaagatgtc |
162 |
Q |
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||| |||||||||||||||| ||||||||||| |||||| |||| |||||||||||| |
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| T |
9391142 |
agt-----agtcttggttgtttgcatttttagtactctgttgtcattgcaatgaaagatgtc |
9391086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0331 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0331
Description:
Target: scaffold0331; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 2595 - 2723
Alignment:
| Q |
1 |
cgatgatgaaaagagttatgggactactcctcgtactgattttcagagatatattagattaaagagaagtggtatgttttctattgatttttgagttttg |
100 |
Q |
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||||||||||| ||| ||||||||||||||||||||| ||||||| | |||||| |||||||||||||| |||| ||||| ||||||||||||||||||| |
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| T |
2595 |
cgatgatgaaaggagctatgggactactcctcgtacttattttcaaaaatatatcagattaaagagaagcggtaagttttgtattgatttttgagttttg |
2694 |
T |
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| Q |
101 |
aagtatatcagtcttggttgtttgcctttttagt |
134 |
Q |
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|||| |||||||||||||||| |||||||| |
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| T |
2695 |
aagt-----agtcttggttgtttgcatttttagt |
2723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 1339070 - 1338971
Alignment:
| Q |
1 |
cgatgatgaaaagagttatgggactactcctcgtactgattttcagagatatattagattaaagagaagtggtatgttttctattgatttttgagttttg |
100 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
1339070 |
cgatgatgaaaagagctacgggactactcctcgtactgattttcaaaaatatatcagattaaagagaagtggtatgttttgtattga--tttgagttttg |
1338973 |
T |
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