View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_69 (Length: 242)
Name: NF9779_low_69
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_69 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 22 - 233
Target Start/End: Complemental strand, 472325 - 472114
Alignment:
| Q |
22 |
tagttgaacatttggagaagaaaataacgataacaatggaacactgatactgagattgtttttgaggtgtgtgaaaggatgaatatgattgcagaagaaa |
121 |
Q |
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| T |
472325 |
tagttgaacatttggagaagaaaataacgataacaatggaacactgatactgagattgtttttgaggtgtgtgaaaggatgaatatgattgcagaagaaa |
472226 |
T |
|
| Q |
122 |
tctagcgtgggtggtctatcataaagctatgttcatcatataatctgatggtttaaaaacaatttttctatgatgggaaacaagccgtctttcccatatt |
221 |
Q |
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| T |
472225 |
tctagtgtaggtggtctatcataaagctatgttcatcatataatctgatggtttaaaaacaactttcctatggtgggaaacaagcagtctttcccatatt |
472126 |
T |
|
| Q |
222 |
aaatgtcaccta |
233 |
Q |
| |
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|||||||||||| |
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| T |
472125 |
aaatgtcaccta |
472114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 201
Target Start/End: Complemental strand, 35107007 - 35106902
Alignment:
| Q |
98 |
ggatgaatatgattgcagaagaa--atctagcgtgggtggtctatcataaagctatgttcatcatataatctgatggtttaaaaacaatttttctatgat |
195 |
Q |
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||||| |||||||||||||| || |||||| ||| ||||||||||||||||||||| | |||||| |||||||| || ||||| || ||| | ||||| |
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| T |
35107007 |
ggatgcatatgattgcagaaaaataatctagtgtgagtggtctatcataaagctatggttgtcatatgatctgatgcttaaaaaataactttcccatgat |
35106908 |
T |
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| Q |
196 |
gggaaa |
201 |
Q |
| |
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||||| |
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| T |
35106907 |
aggaaa |
35106902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 204
Target Start/End: Complemental strand, 54453227 - 54453122
Alignment:
| Q |
99 |
gatgaatatgattgcagaagaaatctagcgtgggtggtctatcataaagctatgttcatcatataatctgatggtttaaaaacaatttttctatgatggg |
198 |
Q |
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| T |
54453227 |
gatgaatatgattgcggaaacgatctagtgtgggcggtctatcataaagatatgctcatcatatgatctgatggttaaaaaataatttttccatgatggg |
54453128 |
T |
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| Q |
199 |
aaacaa |
204 |
Q |
| |
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|||||| |
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| T |
54453127 |
aaacaa |
54453122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 35459504 - 35459574
Alignment:
| Q |
134 |
ggtctatcataaagctatgttcatcatataatctgatggtttaaaaacaatttttctatgatgggaaacaa |
204 |
Q |
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| T |
35459504 |
ggtctatcataaagatatgctcatcatatgatctgatggttaaaaaataatttttctatggtgagaaacaa |
35459574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 204
Target Start/End: Original strand, 43317032 - 43317137
Alignment:
| Q |
99 |
gatgaatatgattgcagaagaaatctagcgtgggtggtctatcat-aaagctatgttcatcatataatctgatggtttaaaaacaatttttctatgatgg |
197 |
Q |
| |
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||||||||||||||||||| ||||||| ||||| |||||||||| |||| |||| ||||||||| ||| ||||||| ||||| || ||| | ||||||| |
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| T |
43317032 |
gatgaatatgattgcagaaacaatctagtgtgggcggtctatcataaaagatatgctcatcatatgatccgatggttaaaaaataa-tttcccatgatgg |
43317130 |
T |
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| Q |
198 |
gaaacaa |
204 |
Q |
| |
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||||||| |
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| T |
43317131 |
gaaacaa |
43317137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 204
Target Start/End: Original strand, 50950811 - 50950916
Alignment:
| Q |
99 |
gatgaatatgattgcagaagaaatctagcgtgggtggtctatcataaagctatgttcatcatataatctgatggtttaaaaacaatttttctatgatggg |
198 |
Q |
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||||||||||||||| ||| ||||||| ||||| ||||||||||||| |||| |||| |||| || ||||||| ||||| |||||| ||||| |||| |
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| T |
50950811 |
gatgaatatgattgcggaaacaatctagtgtgggcagtctatcataaagatatgctcattatatgattcgatggttaaaaaataattttcctatggtggg |
50950910 |
T |
|
| Q |
199 |
aaacaa |
204 |
Q |
| |
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|||||| |
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|
| T |
50950911 |
aaacaa |
50950916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 29291108 - 29291177
Alignment:
| Q |
135 |
gtctatcataaagctatgttcatcatataatctgatggtttaaaaacaatttttctatgatgggaaacaa |
204 |
Q |
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| T |
29291108 |
gtctatcataaagctatgcacaccatatggtctgatggttaaaaaataacttttctatgatgggaaacaa |
29291177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 3148288 - 3148224
Alignment:
| Q |
135 |
gtctatcataaagctatgttcatcatataatctgatggtttaaaaacaatttttctatgatgggaa |
200 |
Q |
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|||||| ||||| |||||| | |||| ||||||||||| |||||||||| ||||| |||||||||| |
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| T |
3148288 |
gtctataataaaactatgtacttcatttaatctgatgg-ttaaaaacaacttttccatgatgggaa |
3148224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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