View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_7 (Length: 501)
Name: NF9779_low_7
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 245 - 485
Target Start/End: Complemental strand, 52859171 - 52858933
Alignment:
| Q |
245 |
tttagtgcttagcatacgaaaatggagatacgttgaaggtgggcatgttttgagaaaaaagaggcacgtgattgtaacaacaagttgatttaaaagtatt |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
52859171 |
tttagtgcttagcatacgaaaatggagatacgttgaaggtgggcatgttttgagaaaaaagaggcacgtgattgtaacaa---gttgatttaaaagtatt |
52859075 |
T |
|
| Q |
345 |
gtacaagtggggtgtgaggcagcgcatctaatctaaatatccattatatcttgtttgttttttgaataacagtccgtcaaccccacccaaaccaccaact |
444 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52859074 |
gtacaagtggggtgtgaggcagcgcatctaatctaaatatccattatatcttgtttgttttttgaataacagtccctcaaccccacccaaaccaccaact |
52858975 |
T |
|
| Q |
445 |
tgcttcttattcttctaatt-aattaattgaaatcatcaaat |
485 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52858974 |
tgcttcttattcttctaattaaattaattgaaatcatcaaat |
52858933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 56 - 220
Target Start/End: Complemental strand, 52860070 - 52859905
Alignment:
| Q |
56 |
ctcccctgtttctcttctatgcctaacaggagaagt-catcatctcttttaacttctctcttccttcactctctcttccctatttctatcctaacgaaac |
154 |
Q |
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| T |
52860070 |
ctcccctatttctcttctccgccgaacaggagaagttcatcatctcttttaacttctctcttccttcactctctcttccctatttatgtcctaacgaatc |
52859971 |
T |
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| Q |
155 |
agagtgttaatgaatggaaagaagccgccaatgggatgggagtatatataatactactaattaatt |
220 |
Q |
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| T |
52859970 |
agagtgttaatgaatggaaagaagccgccaatgggatgggagtatatataatactactaattaatt |
52859905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 30195694 - 30195627
Alignment:
| Q |
53 |
tccctcccctgtttctcttctatgcctaacaggagaagt-catcatctct-tttaacttctctcttcc |
118 |
Q |
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| T |
30195694 |
tccctcccctatttctcttctttaccaaacatgagaagttcatcatctctctttaacttctctcttcc |
30195627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 11739172 - 11739245
Alignment:
| Q |
91 |
tcatcatctctttt-aacttctctcttccttcactctctcttccctatttctatcctaacgaaacagagtgttaa |
164 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
11739172 |
tcatcatctctcttcaacttctctcttccttcactctctcttccctatttctatcct-accaaacagagtgttaa |
11739245 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 8225212 - 8225305
Alignment:
| Q |
56 |
ctcccctgtttctcttctatgcctaacaggagaagt-catcatctctttt-aacttctctcttccttcactctctcttccctatttctatccta |
147 |
Q |
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| T |
8225212 |
ctcccctatttctcttcactaccaaacaggagaagttcatcatctctcttcaacttctctcttccttcactctctcttccctatttccatccta |
8225305 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 9578778 - 9578721
Alignment:
| Q |
105 |
aacttctctcttccttcactctctcttccctatttctatcctaacgaaacagagtgtta |
163 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
9578778 |
aacttctctcatccttcactctctcttccctatttctatcct-accaaacagagtgtta |
9578721 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 9635693 - 9635600
Alignment:
| Q |
56 |
ctcccctgtttctcttctatgcctaacaggagaagtcatc-atctctttt-aacttctctcttccttcactctctcttccctatttctatccta |
147 |
Q |
| |
|
|||||||||||||||||| | || |||||||||||| | |||||| || |||||||||| ||||||||||| ||||||||||||||| |||| |
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| T |
9635693 |
ctcccctgtttctcttctctaccaaacaggagaagtttactatctctcttcaacttctctcctccttcactctatcttccctatttctacccta |
9635600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 28861075 - 28861157
Alignment:
| Q |
80 |
aacaggagaagt-catcatctctttt-aacttctctcttccttcactctctcttccctatttctatcctaacgaaacagagtgt |
161 |
Q |
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|||||||||||| || ||||||| || ||||||||||||||| |||||||||||||||||||| |||| || ||||||||||| |
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| T |
28861075 |
aacaggagaagttcaccatctctcttcaacttctctcttcctatactctctcttccctatttctgtcct-accaaacagagtgt |
28861157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 43326156 - 43326195
Alignment:
| Q |
108 |
ttctctcttccttcactctctcttccctatttctatccta |
147 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
43326156 |
ttctctcttccttcactctctcttccctatttctacccta |
43326195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 18370453 - 18370360
Alignment:
| Q |
56 |
ctcccctgtttctcttctatgcctaacaggagaagtcatc-atctctttt-aacttctctcttccttcactctctcttccctatttctatccta |
147 |
Q |
| |
|
|||||||||||||||||| | || | |||||||||| | |||||| || || ||||||| ||||||||||||||||||||||||||| |||| |
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| T |
18370453 |
ctcccctgtttctcttctctaccaatcaggagaagtttactatctctcttcaatttctctcctccttcactctctcttccctatttctacccta |
18370360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 142
Target Start/End: Original strand, 7730583 - 7730617
Alignment:
| Q |
108 |
ttctctcttccttcactctctcttccctatttcta |
142 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
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| T |
7730583 |
ttctctcttccttcactctctcttctctatttcta |
7730617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 142
Target Start/End: Complemental strand, 28685726 - 28685692
Alignment:
| Q |
108 |
ttctctcttccttcactctctcttccctatttcta |
142 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| |
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| T |
28685726 |
ttctctcttccttcactctctcttctctatttcta |
28685692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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