View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_70 (Length: 240)
Name: NF9779_low_70
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_70 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 26 - 240
Target Start/End: Original strand, 26209704 - 26209918
Alignment:
| Q |
26 |
gcttcttgaaaccttcctaatccaatcaaagcagcactcttattgcaatgataagttgccttatttgaatcaatagcaattgctttgtcatacaaagcca |
125 |
Q |
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| T |
26209704 |
gcttcttgaaaccttcctaatccaatcaaagcagcactcttattgcaatgataagttgccttatttgaatcaatagcaattgctttgtcatacaaagcca |
26209803 |
T |
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| Q |
126 |
aagcctcttcaaaattaccctttttgtatgcttcatttcccatagatttcaacacttcagggtctgcaatattgtgcctttgacttagaaactgtgcaag |
225 |
Q |
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| T |
26209804 |
aagcctcttcaaacttaccctttttgtatgcttcatttcccattgatttcaacacttcagggtctgcaatattgtgcctttgacttagaaactgtgcaag |
26209903 |
T |
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| Q |
226 |
ttcgttactattctt |
240 |
Q |
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| T |
26209904 |
ttcattactattctt |
26209918 |
T |
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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 190
Target Start/End: Original strand, 33531772 - 33531930
Alignment:
| Q |
32 |
tgaaaccttcctaatccaatcaaagcagcactcttattgcaatgataagttgccttatttgaatcaatagcaattgctttgtcatacaaagccaaagcct |
131 |
Q |
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||||||||||| || |||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| |
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| T |
33531772 |
tgaaaccttcccaaaccaatcaaagcagcactcttgttacaatgataagttgccttattggaatcaatagcaatagctcgttcatacaaagccaaagcct |
33531871 |
T |
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| Q |
132 |
cttcaaaattaccctttttgtatgcttcatttcccatagatttcaacacttcagggtct |
190 |
Q |
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| T |
33531872 |
cagaaaatcttccttgtttgtatgcttcatttcccattgatttcaacacctcagggtct |
33531930 |
T |
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