View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_72 (Length: 239)
Name: NF9779_low_72
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 42112885 - 42113114
Alignment:
| Q |
1 |
cataatcctctccgccaggttttaactctaatcatcaaataaaattnnnnnnn-------cccaaatctttttcgtagctgtttctctcccaccggttgg |
93 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
42112885 |
cataatcctctccgccaggttttaactctaatcatcaaataaaattaaaaaaaaaaaaaacccaaatctttttcgcagctgtttctctcccaccggttgg |
42112984 |
T |
|
| Q |
94 |
gagtagtggggagacagagaaacaaaacacatttaatcattgatcaaagtgtttcctcttatccccgctgtcccatccggcccataattaaaccctatct |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42112985 |
gagtagtggggagacagagaaacaaaacacatttaatcattgatcaaagtgtttcctcttatccccgctgtcccatccggcccataattaaaccctatct |
42113084 |
T |
|
| Q |
194 |
atgccttcttttcattctcataacaacttt |
223 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
42113085 |
atgccttcttttcattctcataacaacttt |
42113114 |
T |
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