View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9779_low_74 (Length: 238)

Name: NF9779_low_74
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9779_low_74
NF9779_low_74
[»] chr4 (3 HSPs)
chr4 (14-222)||(39236000-39236210)
chr4 (70-222)||(20123617-20123769)
chr4 (22-59)||(55109797-55109834)
[»] chr6 (1 HSPs)
chr6 (78-222)||(31274629-31274774)
[»] chr3 (1 HSPs)
chr3 (95-215)||(23369669-23369789)
[»] chr7 (1 HSPs)
chr7 (77-222)||(8736827-8736971)
[»] chr1 (3 HSPs)
chr1 (77-149)||(26215976-26216049)
chr1 (14-59)||(28970667-28970712)
chr1 (14-59)||(51411082-51411126)
[»] scaffold0152 (3 HSPs)
scaffold0152 (70-172)||(1756-1857)
scaffold0152 (70-172)||(6003-6104)
scaffold0152 (70-172)||(15928-16029)
[»] chr5 (1 HSPs)
chr5 (70-172)||(21198000-21198101)
[»] chr8 (1 HSPs)
chr8 (14-59)||(30288651-30288696)
[»] chr2 (1 HSPs)
chr2 (14-56)||(35431546-35431588)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 39236000 - 39236210
Alignment:
Q  14 gagatgaattgctcttggtggttataatatttcattttggcttcttnnnnnnnnnn--ttatcttgctttagttagttatcaattagttagaagagttct 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||    
T  39236000 gagatgaattgctcttggtggttataatatttcattttggcttcttaaaagaaaaaaattatcttgctttagttagttatcaattagttagaagagttct 39236099  T
Q  112 aatactctaagctacagctcattgtaatatagtacaccacttagcttctatataagttgtactccttcattattcatcaattaatgagaatgttattcat 211  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39236100 aatactctatgctacacctcattgtaatatagtacaccacttagcttctatataagttgtactccttcattattcatcaattaatgagaatgttattcat 39236199  T
Q  212 ctatttcttct 222  Q
    |||||||||||    
T  39236200 ctatttcttct 39236210  T

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Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 70 - 222
Target Start/End: Original strand, 20123617 - 20123769
Alignment:
Q  70 ttatcttgctttagttagttatcaattagttagaagagttctaatactctaagctacagctcattgtaatatagtacaccacttagcttctatataagtt 169  Q
    |||||| ||||||||||||| ||| |||||||||||||||||||||||||| |||  |||||| ||||||||||| ||||||||||||||||||||||||    
T  20123617 ttatctagctttagttagttttcagttagttagaagagttctaatactctatgcttaagctcactgtaatatagtgcaccacttagcttctatataagtt 20123716  T
Q  170 gtactccttcattattcatcaattaatgagaatgttattcatctatttcttct 222  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20123717 ttactccttcattattcatcaattaatgagaatattattcatctatttcttct 20123769  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 55109797 - 55109834
Alignment:
Q  22 ttgctcttggtggttataatatttcattttggcttctt 59  Q
    |||||||||||||||||||||||||||||||| |||||    
T  55109797 ttgctcttggtggttataatatttcattttgggttctt 55109834  T

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Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 31274629 - 31274774
Alignment:
Q  78 ctttagttagttatcaattagttagaagagttctaatactctaagctacagctcattgtaatatagtacaccacttagcttctatataagttgtactcct 177  Q
    |||||||| |||  || |||||||||||||||| ||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||| ||||||||||    
T  31274629 ctttagtttgtttacagttagttagaagagttccaatactctatgcttcagctcattgtaatatagtatacctcttagcttctatataaattgtactcct 31274728  T
Q  178 tcatta-ttcatcaattaatgagaatgttattcatctatttcttct 222  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  31274729 tcattatttcatcaattaatgagaatgttattcatctatttcttct 31274774  T

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Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 23369789 - 23369669
Alignment:
Q  95 ttagttagaagagttctaatactctaagctacagctcattgtaatatagtacaccacttagcttctatataagttgtactccttcattattcatcaatta 194  Q
    ||||||||| |||||||||||||||| |||  | |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23369789 ttagttagatgagttctaatactctatgcttgacctcattgtaacatagtacaccacttagtttctatataagttgtactccttcattattcatcaatta 23369690  T
Q  195 atgagaatgttattcatctat 215  Q
    ||||||||||| |||||||||    
T  23369689 atgagaatgttcttcatctat 23369669  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 222
Target Start/End: Complemental strand, 8736971 - 8736827
Alignment:
Q  77 gctttagttagttatcaattagttagaagagttctaatactctaagctacagctcattgtaatatagtacaccacttagcttctatataagttgtactcc 176  Q
    ||||||||| ||| ||| ||||||||||||||| || ||||||| | ||   ||||||||||| |||||||||||||||  ||||||||||||||| | |    
T  8736971 gctttagttggtt-tcagttagttagaagagttttactactctatgttatgcctcattgtaatgtagtacaccacttagaatctatataagttgtaat-c 8736874  T
Q  177 ttca-ttattcatcaattaatgagaatgttattcatctatttcttct 222  Q
    | || | |||||||||||||||||||| |||||||||||||||||||    
T  8736873 tacactcattcatcaattaatgagaatattattcatctatttcttct 8736827  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 26215976 - 26216049
Alignment:
Q  77 gctttagttagttatcaattagttagaagagttctaatactctaagctacagctcattgt-aatatagtacacc 149  Q
    |||||||||||||   | |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||    
T  26215976 gctttagttagtttctagttagttagaagagttctaatactctatgcttcagctcattgtaaatatagtacacc 26216049  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 28970667 - 28970712
Alignment:
Q  14 gagatgaattgctcttggtggttataatatttcattttggcttctt 59  Q
    ||||||||| |||||||||| |||| ||||||||||||| ||||||    
T  28970667 gagatgaatcgctcttggtgattattatatttcattttgccttctt 28970712  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 51411082 - 51411126
Alignment:
Q  14 gagatgaattgctcttggtggttataatatttcattttggcttctt 59  Q
    |||||||||||||||||||| ||||  |||||||||||||||||||    
T  51411082 gagatgaattgctcttggtgattat-ttatttcattttggcttctt 51411126  T

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Target: scaffold0152 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 1857 - 1756
Alignment:
Q  70 ttatcttgctttagttagttatcaattagttagaagagttctaatactctaagctacagctcattgtaatatagtacaccacttagcttctatataagtt 169  Q
    |||||| ||||||||||||| ||  ||||||| ||||||| |||||||||| ||||   |||||||||||||||| |||| |||||   |||||||||||    
T  1857 ttatctagctttagttagtt-tctgttagttacaagagttttaatactctatgctatgtctcattgtaatatagtgcacctcttagaggctatataagtt 1759  T
Q  170 gta 172  Q
    |||    
T  1758 gta 1756  T

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Target: scaffold0152; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 6104 - 6003
Alignment:
Q  70 ttatcttgctttagttagttatcaattagttagaagagttctaatactctaagctacagctcattgtaatatagtacaccacttagcttctatataagtt 169  Q
    |||||| ||||||||||||| ||  ||||||| ||||||| |||||||||| ||||   |||||||||||||||| |||| |||||   |||||||||||    
T  6104 ttatctagctttagttagtt-tctgttagttacaagagttttaatactctatgctatgtctcattgtaatatagtgcacctcttagaggctatataagtt 6006  T
Q  170 gta 172  Q
    |||    
T  6005 gta 6003  T

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Target: scaffold0152; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 16029 - 15928
Alignment:
Q  70 ttatcttgctttagttagttatcaattagttagaagagttctaatactctaagctacagctcattgtaatatagtacaccacttagcttctatataagtt 169  Q
    |||||| ||||||||||||| ||  ||||||| ||||||| |||||| ||| | ||   |||||||||||||||| |||| |||||   |||||||||||    
T  16029 ttatctagctttagttagtt-tctgttagttacaagagttttaataccctatgatatgtctcattgtaatatagtgcacctcttagaggctatataagtt 15931  T
Q  170 gta 172  Q
    |||    
T  15930 gta 15928  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 21198101 - 21198000
Alignment:
Q  70 ttatcttgctttagttagttatcaattagttagaagagttctaatactctaagctacagctcattgtaatatagtacaccacttagcttctatataagtt 169  Q
    |||||| ||||||||||||| ||  ||||||| ||||||| |||||||||| ||||   |||||||||||||||| |||| |||||   |||||||||||    
T  21198101 ttatctagctttagttagtt-tctgttagttacaagagttttaatactctatgctatgtctcattgtaatatagtgcacctcttagaggctatataagtt 21198003  T
Q  170 gta 172  Q
    |||    
T  21198002 gta 21198000  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 30288651 - 30288696
Alignment:
Q  14 gagatgaattgctcttggtggttataatatttcattttggcttctt 59  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||    
T  30288651 gagatgaattgctcttggtgttaatagtatttcattttggcttctt 30288696  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 35431546 - 35431588
Alignment:
Q  14 gagatgaattgctcttggtggttataatatttcattttggctt 56  Q
    ||||||||| |||||||||| |||| |||||||||||||||||    
T  35431546 gagatgaatagctcttggtgattattatatttcattttggctt 35431588  T

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