View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_79 (Length: 232)
Name: NF9779_low_79
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_79 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 44582891 - 44582692
Alignment:
| Q |
15 |
cacagactcttccacatcttcaaatccaatgccaccaatcccatcgtcgttgaaaaccgttttgccttttacgacaccgtttcgcgtctcgccagtgcta |
114 |
Q |
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| T |
44582891 |
cacaaactcttccacatcttcaaatccaatgccaccaatcccatcgtcgttgaaaaccgttttgccttttacgacaccgtttcgcgtctcgccggtgcta |
44582792 |
T |
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| Q |
115 |
aacgatttgattacattgaacaattactcgaacagcagaagaagttaccgcaatcgcgccgtgaagggtttgttgtaagaattattacattgtatggtaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44582791 |
aacgatttgattacattgaacaattactcgaacagcagaagaagttaccgcaatcgcgccgtgaagggtttgttgtaagaattattacattgtatggtaa |
44582692 |
T |
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