View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_82 (Length: 227)
Name: NF9779_low_82
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_82 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 2507366 - 2507563
Alignment:
| Q |
13 |
cataggcacgtggattgatagaagattttgggtcactcataagagtcctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcatt |
112 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2507366 |
cataggcacgtggattgatagaagcttttgggtcactcataagagtcctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcatt |
2507465 |
T |
|
| Q |
113 |
ggaaccttctggaagcttaagatttatagtactatcaacaatgttgaggtctgattctttaggaaaaccagacacgtagtgtttcagaagcacttgct |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2507466 |
ggaaccttctggaagcttaagatttatagtactatcaacaatgttgaggtctgattctttaggaaaaccagacacatagtgtttcagaagcacttgct |
2507563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 2514458 - 2514654
Alignment:
| Q |
15 |
taggcacgtggattgatagaagattttgggtcactcataagagtcctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattgg |
114 |
Q |
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| T |
2514458 |
taggcacgtggattgatagaagcttttgggtcactcataagagtcctcatttaaggatcacaagacaagtaaagatttttaaccaatacagtatcattgg |
2514557 |
T |
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| Q |
115 |
aaccttctggaagcttaagatttatagtactatcaacaatgttgaggtctgattctttaggaaaaccagacacgtagtgtttcagaagcacttgctg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
2514558 |
aaccttctggaagcttaagatttatagtactatcaacaatgttgaggtctgattctttaggaaaaccagacacataatgtttcagaagcacttgctg |
2514654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 60 - 210
Target Start/End: Complemental strand, 2434555 - 2434405
Alignment:
| Q |
60 |
ctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaatgttga |
159 |
Q |
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|||||||||||||||||||||||||| |||||||| | ||| || |||||||||||||| ||||||||| || |||| ||||| ||||||||||||| |
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| T |
2434555 |
ctcatgtaaggatcacaagacaagtacagatttttgagcaaaaccacatcattggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttga |
2434456 |
T |
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| Q |
160 |
ggtctgattctttaggaaaaccagacacgtagtgtttcagaagcacttgct |
210 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||| |||||||| |
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| T |
2434455 |
ggtctgattctttaggaaaaccagacacatagtccttcagaatcacttgct |
2434405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 49 - 210
Target Start/End: Original strand, 2519204 - 2519365
Alignment:
| Q |
49 |
tcataagagtcctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatc |
148 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||| | || | | |||||||||| ||| ||||||||| ||| |||| ||||| || |
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| T |
2519204 |
tcataagattcctcatgtaaggatcacaagacaagtagagatttttgagcagaagaacatcattggaagcttgtggaagcttgagagttatggtactgtc |
2519303 |
T |
|
| Q |
149 |
aacaatgttgaggtctgattctttaggaaaaccagacacgtagtgtttcagaagcacttgct |
210 |
Q |
| |
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|| ||||| | ||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
2519304 |
aatgatgttcatgtctgattctttaggaaaaccagacacatagtgtttcagaattacttgct |
2519365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 60 - 210
Target Start/End: Complemental strand, 2430975 - 2430825
Alignment:
| Q |
60 |
ctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaatgttga |
159 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| | || ||| |||||| ||||||| ||||||||| ||| |||||||||| || ||||| || | |
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| T |
2430975 |
ctcatgtaaggatcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttatagtactgtctacaatattca |
2430876 |
T |
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| Q |
160 |
ggtctgattctttaggaaaaccagacacgtagtgtttcagaagcacttgct |
210 |
Q |
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||||||||||||||||||||||||||| |||| ||||||| |||||||| |
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| T |
2430875 |
tgtctgattctttaggaaaaccagacacatagtccttcagaatcacttgct |
2430825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 210
Target Start/End: Original strand, 2498870 - 2499028
Alignment:
| Q |
49 |
tcataagagtcctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatc |
148 |
Q |
| |
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|||| ||| |||||||| | ||||||||||||||||| | |||||| | || ||| ||||||||||||| ||||||||||||| | || |||| || |
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| T |
2498870 |
tcatgagattcctcatgaatggatcacaagacaagtataaattttttagcagaaca---tcattggaaccttgtggaagcttaagagtaattatactttc |
2498966 |
T |
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| Q |
149 |
aacaatgttgaggtctgattctttaggaaaaccagacacgtagtgtttcagaagcacttgct |
210 |
Q |
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| T |
2498967 |
aataatgttcatgtctgattctttaggaaaaccagatacatagtccttcagaatcacttgct |
2499028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 60 - 210
Target Start/End: Complemental strand, 1458014 - 1457864
Alignment:
| Q |
60 |
ctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaatgttga |
159 |
Q |
| |
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|||| |||||||||||| || ||||| |||||||| | || ||| |||||||||||||| |||||| || ||| | || ||||||||||||| || | |
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| T |
1458014 |
ctcaggtaaggatcacaggataagtagagattttttagcagaacaacatcattggaaccttgtggaaggttgagaataattgtactatcaacaacattca |
1457915 |
T |
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| Q |
160 |
ggtctgattctttaggaaaaccagacacgtagtgtttcagaagcacttgct |
210 |
Q |
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||||||||| ||||||||||||||||| |||| | ||| || |||||||| |
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| T |
1457914 |
tgtctgattccttaggaaaaccagacacatagtctctcaaaatcacttgct |
1457864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 60 - 210
Target Start/End: Complemental strand, 2427721 - 2427571
Alignment:
| Q |
60 |
ctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaatgttga |
159 |
Q |
| |
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|||| |||||||||||| || ||||| |||||||| | || ||| |||||||||||||| |||||| || ||| | || ||||||||||||| || | |
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| T |
2427721 |
ctcaggtaaggatcacaggataagtagagatttttgagcagaacaacatcattggaaccttgtggaaggttgagaataattgtactatcaacaacattca |
2427622 |
T |
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| Q |
160 |
ggtctgattctttaggaaaaccagacacgtagtgtttcagaagcacttgct |
210 |
Q |
| |
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||||||||| ||||||||||||||||| |||| | ||| || |||||||| |
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| T |
2427621 |
tgtctgattccttaggaaaaccagacacatagtctctcaaaatcacttgct |
2427571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 11846044 - 11846008
Alignment:
| Q |
55 |
gagtcctcatgtaaggatcacaagacaagtaaagatt |
91 |
Q |
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|||||||| ||||||| |||||||||||||||||||| |
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| T |
11846044 |
gagtcctcgtgtaaggttcacaagacaagtaaagatt |
11846008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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