View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9779_low_83 (Length: 227)
Name: NF9779_low_83
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_83 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 36 - 210
Target Start/End: Complemental strand, 53298415 - 53298241
Alignment:
| Q |
36 |
tcccccaaaatatggttaaaattaggaccttaaagactttagaaatggttcatgagatttatcctccatgaccgaattcgagactatcctctcatccttt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53298415 |
tcccccaaaatatggttaaaattaggaccttaatgactttagaaatggttcatgagatttatcctccatgaccgaattcgagactatcctctcatccttt |
53298316 |
T |
|
| Q |
136 |
atcgattagatagccaaaatatgtttaaatttgattaacttgtgtacaagacctccataacctaaatgggagatt |
210 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
53298315 |
atcgattagatagccaaagtatgtttaaatttgattaacttgtgtacaagacctccataacctaaatgagagatt |
53298241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University