View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_84 (Length: 224)
Name: NF9779_low_84
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_84 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 12761604 - 12761797
Alignment:
| Q |
14 |
aaaggcctaagacatggctacacattacacttccagagtcactatttccattgttgttttgcttgcttcccttatcacaaatgttgttgcaaccaaagaa |
113 |
Q |
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| T |
12761604 |
aaagacctaagacatggctacacattacacttccagagtcactatttccattgttgttttgcttgcttcccttatcacaaatgttgttgcaaccaaagaa |
12761703 |
T |
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| Q |
114 |
acaacaatatcagatgttgatcttcttgaatttcctcttaacttagagtacttggaagctgaattctttttatttggatcatatggtcatggat |
207 |
Q |
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| T |
12761704 |
acaacattatcagatgttgatcttcttgaatttcctcttaatttagagtacttggaggctgaattctttttatttggatcatttggtcatggat |
12761797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 12782912 - 12782996
Alignment:
| Q |
123 |
tcagatgttgatcttcttgaatttcctcttaacttagagtacttggaagctgaattctttttatttggatcatatggtcatggat |
207 |
Q |
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| T |
12782912 |
tcagatgttgatcttctcgaatttcctcttaatttagagtacttggaggctgaattctttttatttggatcattaggtcatggat |
12782996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 12770935 - 12771019
Alignment:
| Q |
123 |
tcagatgttgatcttcttgaatttcctcttaacttagagtacttggaagctgaattctttttatttggatcatatggtcatggat |
207 |
Q |
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| T |
12770935 |
tcagatgatgatcttcttgaatttcctcttaatttagaatatttggaagctgaattctttttatttggatcattaggtcatggat |
12771019 |
T |
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