View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9779_low_87 (Length: 220)

Name: NF9779_low_87

Description: NF9779

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9779_low_87

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 132; E-Value: 1e-68

Query Start/End: Original strand, 14 - 145

Target Start/End: Complemental strand, 46616236 - 46616105

Alignment:

Q	14	cagagaaacgtgaataatattttgtgttgtgtttttaacctttgaatttgagcaagaaacgctggttcggttgaatgctaagtaaggttttgttttcaaa	113	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	46616236	cagagaaacgtgaataatattttgtgttgtgtttttaacctttgaatttgagcaagaaacgctggttcggttgaatgctaagtaaggttttgttttcaaa	46616137	T

Q	114	gggtaataagcatcaaagaccaagtatgcata	145	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	46616136	gggtaataagcatcaaagaccaagtatgcata	46616105	T

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Target: chr7; HSP #2

Raw Score: 36; E-Value: 0.00000000002

Query Start/End: Original strand, 34 - 114

Target Start/End: Original strand, 46645145 - 46645229

Alignment:

Q	34	tttgtgttgtgtttttaacctttgaatttgagcaagaaacgctg----gttcggttgaatgctaagtaaggttttgttttcaaag	114	Q
		\|\|\|\|\|\|\| \|\|\| \| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| \| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	46645145	tttgtgtagtgatgttaacctttgagtttgagaaagaaacgttgaatcggttggttgaatgctaagtaaggttttgttttcaaag	46645229	T

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