View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9779_low_88 (Length: 217)

Name: NF9779_low_88
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9779_low_88
NF9779_low_88
[»] chr8 (8 HSPs)
chr8 (12-189)||(264137-264319)
chr8 (12-189)||(651602-651784)
chr8 (12-189)||(837337-837519)
chr8 (56-107)||(32292307-32292358)
chr8 (56-109)||(22549180-22549233)
chr8 (56-107)||(10844793-10844844)
chr8 (56-107)||(12827439-12827490)
chr8 (55-107)||(22026289-22026341)
[»] chr2 (3 HSPs)
chr2 (56-109)||(33770918-33770971)
chr2 (55-107)||(33174868-33174920)
chr2 (56-108)||(41754198-41754250)
[»] chr6 (4 HSPs)
chr6 (55-107)||(20896872-20896924)
chr6 (55-108)||(20126366-20126419)
chr6 (55-107)||(6331096-6331148)
chr6 (56-108)||(20850230-20850282)
[»] chr5 (6 HSPs)
chr5 (56-108)||(2193725-2193777)
chr5 (56-107)||(34371522-34371573)
chr5 (56-107)||(34371978-34372029)
chr5 (56-107)||(39146849-39146900)
chr5 (56-107)||(42788830-42788881)
chr5 (55-107)||(20039658-20039710)
[»] chr4 (4 HSPs)
chr4 (56-108)||(1645928-1645980)
chr4 (56-108)||(12692178-12692230)
chr4 (55-107)||(50398716-50398768)
chr4 (55-107)||(8467977-8468029)
[»] scaffold0243 (1 HSPs)
scaffold0243 (56-107)||(1130-1181)
[»] chr7 (4 HSPs)
chr7 (56-107)||(2463552-2463603)
chr7 (56-107)||(34405776-34405827)
chr7 (55-107)||(6747782-6747834)
chr7 (55-107)||(11372361-11372413)
[»] chr3 (1 HSPs)
chr3 (58-105)||(50347658-50347705)
[»] chr1 (11 HSPs)
chr1 (56-107)||(16452118-16452169)
chr1 (56-107)||(16461271-16461322)
chr1 (56-107)||(20054265-20054316)
chr1 (56-107)||(20054721-20054772)
chr1 (56-107)||(20055177-20055228)
chr1 (56-107)||(20055633-20055684)
chr1 (56-107)||(20056089-20056140)
chr1 (56-107)||(20056545-20056596)
chr1 (56-107)||(20056992-20057043)
chr1 (56-107)||(20057448-20057499)
chr1 (56-107)||(20057904-20057955)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 189
Target Start/End: Complemental strand, 264319 - 264137
Alignment:
Q  12 agagaggggaaagaaatattgactccaaaatccgctcatcaagatgccttgtgcatcgg----cgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    |||||| ||||| ||||||||||||||||||||||||    
T  264319 agagaggggaaagaaatattaactccaagatccgctcatcaagatgccttgtgcatcggtcggcgatcattctccaccctcgtcacccttgggcgttaca 264220  T
Q  108 gga-ctaaaataaaaaattcgctatatttccagagacttaaaaactcatttaaccctaagttataatatactctaaatatgaa 189  Q
    ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  264219 ggaactaaaataaaaaattcactatatttccagagacttaaaaactcatttaaccctaagttataatatactctaaatatgaa 264137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 651602 - 651784
Alignment:
Q  12 agagaggggaaagaaatattgactccaaaatccgctcatcaagatgccttgtgcatcgg----cgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    |||||| ||||| ||||||||||||||||||||||||    
T  651602 agagaggggaaagaaatattaactccaagatccgctcatcaagatgccttgtgcatcggtcggcgatcattctccaccctcgtcacccttgggcgttaca 651701  T
Q  108 gga-ctaaaataaaaaattcgctatatttccagagacttaaaaactcatttaaccctaagttataatatactctaaatatgaa 189  Q
    ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  651702 ggaactaaaataaaaaattcactatatttccagagacttaaaaactcatttaaccctaagttataatatactctaaatatgaa 651784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 837337 - 837519
Alignment:
Q  12 agagaggggaaagaaatattgactccaaaatccgctcatcaagatgccttgtgcatcgg----cgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    |||||| ||||| ||||||||||||||||||||||||    
T  837337 agagaggggaaagaaatattaactccaagatccgctcatcaagatgccttgtgcatcggtcggcgatcattctccaccctcgtcacccttgggcgttaca 837436  T
Q  108 gga-ctaaaataaaaaattcgctatatttccagagacttaaaaactcatttaaccctaagttataatatactctaaatatgaa 189  Q
    ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  837437 ggaactaaaataaaaaattcactatatttccagagacttaaaaactcatttaaccctaagttataatatactctaaatatgaa 837519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 32292358 - 32292307
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    ||||||||||| |||||||||||| |||||||||||| ||||||| ||||||    
T  32292358 tgccttgtgcaccggcgatcactccccgccctcgtcagccttgggtgttaca 32292307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 22549180 - 22549233
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttacagg 109  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||||    
T  22549180 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacagg 22549233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 10844844 - 10844793
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  10844844 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 10844793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 12827439 - 12827490
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    ||||||||||| |||||||||||| || ||||||||| ||||||| ||||||    
T  12827439 tgccttgtgcaccggcgatcactccccaccctcgtcagccttgggtgttaca 12827490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 22026341 - 22026289
Alignment:
Q  55 atgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    |||||||||||| |||||| |||||  ||||||||||| ||||||| ||||||    
T  22026341 atgccttgtgcaccggcgaccactcctcgccctcgtcagccttgggtgttaca 22026289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 33770971 - 33770918
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttacagg 109  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||||    
T  33770971 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacagg 33770918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 33174920 - 33174868
Alignment:
Q  55 atgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    |||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  33174920 atgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 33174868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 41754250 - 41754198
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttacag 108  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| |||||||    
T  41754250 tgccttgtgcaccggcgaccactccccgccctcgtcatccttgggtgttacag 41754198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 20896872 - 20896924
Alignment:
Q  55 atgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    |||||||||||| |||||| ||||||||| |||||||| ||||||| ||||||    
T  20896872 atgccttgtgcaacggcgaccactctccgtcctcgtcagccttgggtgttaca 20896924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 20126366 - 20126419
Alignment:
Q  55 atgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttacag 108  Q
    |||||||||||| |||||| ||||| |||||||||||  ||||||| |||||||    
T  20126366 atgccttgtgcaccggcgaccactccccgccctcgtcggccttgggtgttacag 20126419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 6331096 - 6331148
Alignment:
Q  55 atgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    |||||||||||| |||||| ||||| || ||||||||| ||||||| ||||||    
T  6331096 atgccttgtgcaccggcgaccactccccaccctcgtcagccttgggtgttaca 6331148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 20850282 - 20850230
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttacag 108  Q
    ||||||||||| |||||| |||||  ||||||||||| ||||||| |||||||    
T  20850282 tgccttgtgcaccggcgaccactcctcgccctcgtcagccttgggtgttacag 20850230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 2193777 - 2193725
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttacag 108  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| |||||||    
T  2193777 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacag 2193725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 34371573 - 34371522
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  34371573 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 34371522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 34372029 - 34371978
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  34372029 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 34371978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 39146900 - 39146849
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    ||||||||||| |||||||||||| || ||||||||| ||||||| ||||||    
T  39146900 tgccttgtgcaccggcgatcactccccaccctcgtcagccttgggtgttaca 39146849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 42788830 - 42788881
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  42788830 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 42788881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 20039658 - 20039710
Alignment:
Q  55 atgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    |||||||||||| |||||| || || |||||||||||| ||||||| ||||||    
T  20039658 atgccttgtgcaccggcgaccattccccgccctcgtcagccttgggtgttaca 20039710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 1645928 - 1645980
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttacag 108  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| |||||||    
T  1645928 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacag 1645980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 12692178 - 12692230
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttacag 108  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| |||||||    
T  12692178 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacag 12692230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 50398716 - 50398768
Alignment:
Q  55 atgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    |||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  50398716 atgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 50398768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 8467977 - 8468029
Alignment:
Q  55 atgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    ||||||||||||  ||||| ||||| |||||||||||| ||| ||||||||||    
T  8467977 atgccttgtgcactggcgaccactccccgccctcgtcaacctcgggcgttaca 8468029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 1181 - 1130
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  1181 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 1130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 2463603 - 2463552
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  2463603 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 2463552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 34405776 - 34405827
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  34405776 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 34405827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 6747782 - 6747834
Alignment:
Q  55 atgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    |||||||||||| |||||| ||||| | |||||||||| ||||||| ||||||    
T  6747782 atgccttgtgcaccggcgaccactccctgccctcgtcagccttgggtgttaca 6747834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 11372413 - 11372361
Alignment:
Q  55 atgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    |||||||||||||||| |||||||||||  || ||| | ||||||||||||||    
T  11372413 atgccttgtgcatcggtgatcactctccatccacgtaagccttgggcgttaca 11372361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 50347705 - 50347658
Alignment:
Q  58 ccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgtta 105  Q
    ||||||||| |||||||||||| |||||||||||| ||||||| ||||    
T  50347705 ccttgtgcaccggcgatcactccccgccctcgtcagccttgggtgtta 50347658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 16452118 - 16452169
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  16452118 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 16452169  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 16461271 - 16461322
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  16461271 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 16461322  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 20054265 - 20054316
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  20054265 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20054316  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 20054721 - 20054772
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  20054721 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20054772  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 20055177 - 20055228
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  20055177 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20055228  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 20055633 - 20055684
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  20055633 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20055684  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 20056089 - 20056140
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  20056089 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20056140  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 20056545 - 20056596
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  20056545 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20056596  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 20056992 - 20057043
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  20056992 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20057043  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 20057448 - 20057499
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  20057448 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20057499  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 20057904 - 20057955
Alignment:
Q  56 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 107  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  20057904 tgccttgtgcaccggcgaccactccccgccctcgtcaaccttgggtgttaca 20057955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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