View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_9 (Length: 477)
Name: NF9779_low_9
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 8309442 - 8309097
Alignment:
| Q |
18 |
taattgaaaattgattttgcattatttttatggagatttgaaaattttgcatatgtcttgtatagatattacttgaatggtttttatgtagctatctagg |
117 |
Q |
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| T |
8309442 |
taattgaaaattgattttgcattatttttatggagatttgaaaattttgcatatgtcttgtatagatattacttgaatggtttttatgtagctatctagg |
8309343 |
T |
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| Q |
118 |
accaggattgattgtagtatataatatgaaaaaggtaactttgttattaatattcatattgattatatattaatttgcttccgttttctttcatttgcag |
217 |
Q |
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| T |
8309342 |
accaggattgattgtactatataatatgaaaaaggtaactttgttattaatattcatattgattatatattaatttgcttccgttttctttcatttgcag |
8309243 |
T |
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| Q |
218 |
gaagatagatataaattagcatcattgagtctggtggtgaaagaactcacggaagtgtgttttcttcaatggttgaacgactgaatgctgaaattcaaac |
317 |
Q |
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| T |
8309242 |
gaagatagatataaattagcatcattgagtctggtggtgaaagaactcacggaagtgtgttttcttcaatggttgaacgactgaatgctgaaattcaaac |
8309143 |
T |
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| Q |
318 |
tcttttggggcatttaaagtatcttgtttttaataaattacgctgg |
363 |
Q |
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| T |
8309142 |
tcttttggggcatttaaagtatcttgtttttaataaattacgctgg |
8309097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 61 - 245
Target Start/End: Complemental strand, 8299922 - 8299744
Alignment:
| Q |
61 |
attttgcatatgtcttgtatagatattacttgaatggtttttatgtagctatctaggaccaggattgattgtagtatataatatgaaaaaggtaactttg |
160 |
Q |
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| T |
8299922 |
attttgcatatgccttgtatagatattatttgaatggtttttaggtagttatctaggattagaattgaatgtactatataatatgaaaatggtaact--- |
8299826 |
T |
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| Q |
161 |
ttattaatattcatattgattatatattaatttgcttccgttttctttcatttgcaggaagatagatataaattagcatcattga |
245 |
Q |
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| T |
8299825 |
---ttaatattgatactgattatgtattgttttccttccgttgtctttcatttgcaggtagatagatatagatcagcatcattga |
8299744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 394 - 463
Target Start/End: Complemental strand, 8309060 - 8308991
Alignment:
| Q |
394 |
ataacatcgctatttcttgttgcctatccttcatcatcaaagtttgcaatttaaagtatgaacacctttg |
463 |
Q |
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| T |
8309060 |
ataacatcgctatttcttgttgcctatccttcatcatcaaagtttgcaatttaaagtatgaacacctttg |
8308991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 455
Target Start/End: Original strand, 18281723 - 18281775
Alignment:
| Q |
403 |
ctatttcttgttgcctatccttcatcatcaaagtttgcaatttaaagtatgaa |
455 |
Q |
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| T |
18281723 |
ctatttcttgttgcctctccctcatcatcaaagtctggaaattaaagtatgaa |
18281775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 220 - 338
Target Start/End: Complemental strand, 27662813 - 27662695
Alignment:
| Q |
220 |
agatagatataaattagcatcattgagtctggtggtgaaagaactcacggaagtgtgttttcttcaatggttgaacgactgaatgctgaaattcaaactc |
319 |
Q |
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| T |
27662813 |
agataggtatagattagcatcattgagtctggtggagaaagaacacaagcaagtgtggtttcttcaatggtcgaacgagtgaatgctgaaattcaaactc |
27662714 |
T |
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| Q |
320 |
ttttggggcatttaaagta |
338 |
Q |
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| T |
27662713 |
ttttggggcatttaaagta |
27662695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 21120778 - 21120857
Alignment:
| Q |
90 |
ttgaatggtttttatgtagctatctaggaccaggattgattgtagtatataatatgaaaaaggtaactttgttattaatatt |
171 |
Q |
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| T |
21120778 |
ttgaagggtttttatgcagctatctagaattaggattgattctactata--atatgaaaatggtaactttgttattaatatt |
21120857 |
T |
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