View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9780_high_14 (Length: 262)
Name: NF9780_high_14
Description: NF9780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9780_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 112 - 247
Target Start/End: Complemental strand, 28939908 - 28939773
Alignment:
| Q |
112 |
tgttatggtacaaagatttagggaaccatatttatggtgaattttcaatggctgtgattcaagctaatagttcattggaggatagaagtgaatttgagtc |
211 |
Q |
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| T |
28939908 |
tgttatggtacaaagatttagggaaccatatttatggtgaattttcaatggctgtgattcaagctaatagttcattggaggatagaagtgaatttgagtc |
28939809 |
T |
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| Q |
212 |
tggacctttgagttctaaccatttgggtcctcaagg |
247 |
Q |
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| T |
28939808 |
tggacctttgagttctaaccatttgggtcctcaagg |
28939773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 28940013 - 28939964
Alignment:
| Q |
1 |
ttagagaggtttgagaaaagatggtgagatcttgctggaagccagctgta |
50 |
Q |
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| T |
28940013 |
ttagagaggtttgagaaaagatggtgagatcttgctggaagccagctgta |
28939964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 247
Target Start/End: Complemental strand, 40327490 - 40327360
Alignment:
| Q |
117 |
tggtacaaagatttagggaaccatatttatggtgaattttcaatggctgtgattcaagctaatagttcattggaggatagaagtgaatttgagtctggac |
216 |
Q |
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| T |
40327490 |
tggtataaggatttgggaaaccatctttatggtgaattttcaatggctgtaattcaagcaaatagttcgttggaggatcgtagccaacttgaatcaggac |
40327391 |
T |
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| Q |
217 |
ctttgagttctaaccatttgggtcctcaagg |
247 |
Q |
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| T |
40327390 |
ctatgagttctgattatttgggtcctcaagg |
40327360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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