View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9780_high_8 (Length: 383)
Name: NF9780_high_8
Description: NF9780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9780_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 2 - 339
Target Start/End: Complemental strand, 38287480 - 38287142
Alignment:
| Q |
2 |
tatttgtgtgtctatatatgtattaaggaaaatggaaaagggtagagtagtaccactcctatacaatttggaaccagtacaaagtgatatcatacgcaca |
101 |
Q |
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| T |
38287480 |
tatttgtgtgtctatatacgtattaaggaaaatggaaaagggtagagtagtaccactcctatacaatttggaaccagtacaaagtgatatcatacgcaca |
38287381 |
T |
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| Q |
102 |
gacnnnnnnnn---ggaaagccaaatcccatatctaagcaataatcaaccgggttcacatatcactaattaattatagacatcatgattataaacttgct |
198 |
Q |
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| T |
38287380 |
gacaaaaaaaaaaaggaaagccaaatcccatatctaagcaataatcaaccgggttcacatatcactaattaatcatagacatcatgattataaacttgct |
38287281 |
T |
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| Q |
199 |
ggattgtcatcaatgaa-gcaataaaaataactaataatcttactgttgattgagctttgtgatcgatgcatgagctaatttaaagaaaatttgtctttg |
297 |
Q |
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||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38287280 |
ggattgtcatcaatgaaagcagtaa---taactaataatcttactgttgattgagctttgtgatcgatgcatgagctaatttaaagaaaatttgtctttg |
38287184 |
T |
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| Q |
298 |
tacacaaatacaccttattgactctttaagagagaaagaaat |
339 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38287183 |
tacacaaatataccttattgactctttaagagagaaagaaat |
38287142 |
T |
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