View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9780_low_11 (Length: 358)
Name: NF9780_low_11
Description: NF9780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9780_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 358
Target Start/End: Original strand, 41153644 - 41153995
Alignment:
| Q |
7 |
tttggagtttggagtgtgagggggaagggaaacatatgggaatccctcacattttcttggagagtatttgttgtagccgtgtaggagtgagatgaaaata |
106 |
Q |
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| T |
41153644 |
tttggagtttggagtgtgagggggaagggaaacatatgggaatccctcacattttcttggagagtatttgttgtagccttgtaggagtgagatgaaaata |
41153743 |
T |
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| Q |
107 |
ctatctttttattttatggattatgttaacaagtatctttaggatattttttaagaagataaaaatagaaatgattgatgagaggggctaaaattgcttc |
206 |
Q |
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| T |
41153744 |
ctatctttttattttaaggattatattaataagtgtccttatgatactttttaagaagataaaaatagaaatgattgatgagagtggctaaaattgcttc |
41153843 |
T |
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| Q |
207 |
taatctatcttttattcttagttatttgaagaagaacatgtttcacactttgaaggattttgcctatactatacaattactttcaatctaatatattttt |
306 |
Q |
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| T |
41153844 |
taatctatcttttattcttagttatttcaagaagaacatgtttcacactttgaaggattttgcctatactatacaattactttcaatctaatatattttt |
41153943 |
T |
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| Q |
307 |
accatatttatttctttaacgagtgttccagagacaattgttagcatttttc |
358 |
Q |
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| T |
41153944 |
accaaatttatttccttaatcagtgttccagagacacttgttagcatttttc |
41153995 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 13645817 - 13645860
Alignment:
| Q |
145 |
ttaggatattttttaagaagataaaaatagaaatgattgatgag |
188 |
Q |
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| T |
13645817 |
ttaggacatttattaagaagataaaaatagaaataattgatgag |
13645860 |
T |
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